Ensembl / ensembl-variationLinks
The Ensembl Variation Perl API and SQL schema
☆29Updated last week
Alternatives and similar repositories for ensembl-variation
Users that are interested in ensembl-variation are comparing it to the libraries listed below
Sorting:
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- ☆95Updated 2 years ago
- ☆78Updated 11 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Maximum likelihood demultiplexing☆47Updated 5 months ago
- An awk-like VCF parser☆56Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- Algorithms to compute DNA complexity☆34Updated 3 years ago
- Platypus Variant Caller☆108Updated last year
- A program to detect denovo-variants using next-generation sequencing data.☆51Updated 5 years ago
- (WIP) best-practices workflow for rare disease☆60Updated last year
- A genotype query interface.☆136Updated 4 years ago
- ☆82Updated 6 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- Understand your transcriptome assembly☆102Updated last year
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆98Updated 2 years ago
- ☆63Updated 4 years ago
- BigWig and BAM utilities☆97Updated last year
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Tools for bam file processing☆55Updated 10 years ago
- conda recipes for genomic data☆85Updated 4 years ago
- Thousand Variant Callers Project Repository☆74Updated 5 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Ultra-efficient taxonomic mapping of NGS data☆52Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- My bioinfo toolbox☆50Updated 6 months ago
- A software for calculating telomere length☆70Updated 6 years ago