Ensembl / ensembl-variationLinks
The Ensembl Variation Perl API and SQL schema
☆28Updated 2 weeks ago
Alternatives and similar repositories for ensembl-variation
Users that are interested in ensembl-variation are comparing it to the libraries listed below
Sorting:
- Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib☆24Updated 5 months ago
- conda recipes for genomic data☆85Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- BigWig and BAM utilities☆96Updated last year
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- small RNA analysis from NGS data☆37Updated 9 months ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Tools for querying and analysis of genomic data☆27Updated 7 months ago
- Maximum likelihood demultiplexing☆47Updated 4 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- Fast fusion detection using kallisto☆80Updated 2 weeks ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆28Updated 5 months ago
- TIDDIT - structural variant calling☆73Updated 2 months ago
- ☆94Updated 2 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 2 months ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 11 months ago
- Ensembl tools☆34Updated 2 months ago