Illumina / Isaac4
Isaac aligner version 4
☆16Updated 2 years ago
Related projects: ⓘ
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 8 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- Structural variant (SV) analysis tools☆36Updated 2 months ago
- Long RNA-seq analysis workflow☆13Updated last week
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Structural Variant Prediction Viewer☆30Updated 7 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆26Updated this week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆31Updated last year
- Digenome-toolkit ver2.☆15Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆14Updated 6 years ago
- Automated Detection and Qualification of Differential Methylation☆10Updated 10 months ago
- A utility for merging and genotyping Illumina-style GVCFs.☆32Updated 5 years ago
- ☆21Updated 11 months ago
- v2.x of the microassembly based somatic variant caller☆14Updated 3 weeks ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Updated 8 years ago
- A set of tools to annotate VCF files with expression and readcount data☆25Updated 2 weeks ago
- Evaluation of phasing performance☆20Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆40Updated 2 years ago
- A command line tool to compute mapping statistics from a BAM file☆21Updated 2 years ago
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆13Updated this week
- Simple convertor from bam to FASTQ☆25Updated 9 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Liftover VCF files☆16Updated 7 years ago
- Simulation tool for ChIP- and other -seq experiments☆11Updated last year
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆16Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year