Ensembl / ensembl-comparaLinks
The Ensembl Compara Perl API and SQL schema
☆55Updated last week
Alternatives and similar repositories for ensembl-compara
Users that are interested in ensembl-compara are comparing it to the libraries listed below
Sorting:
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆87Updated last year
- A fully automated gene annotator from RNA-Seq expression data☆61Updated 2 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- ☆46Updated last week
- Python programs for processing GFF3 files☆102Updated last week
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 8 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 5 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- A fork of exonerate: a generic tool for sequence alignment☆71Updated 2 years ago
- PHAST☆77Updated this week
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆91Updated 4 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- ☆35Updated 2 years ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆97Updated 2 months ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆106Updated this week
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆80Updated 5 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆80Updated 3 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Updated last year
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated last week
- NLR annotation tool☆34Updated last year
- A package for designing compact and comprehensive capture probe sets.☆92Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Merging paired-end reads and removing adapters☆46Updated last month
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆107Updated 7 months ago