Ensembl / ensembl-comparaLinks
The Ensembl Compara Perl API and SQL schema
☆55Updated this week
Alternatives and similar repositories for ensembl-compara
Users that are interested in ensembl-compara are comparing it to the libraries listed below
Sorting:
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆86Updated last year
- A fully automated gene annotator from RNA-Seq expression data☆61Updated 2 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- PHAST☆77Updated this week
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 8 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- A fork of exonerate: a generic tool for sequence alignment☆70Updated 2 years ago
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- Python programs for processing GFF3 files☆102Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 4 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆107Updated 6 months ago
- ONT assembly and Illumina polishing pipeline☆89Updated 5 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15Updated 6 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆95Updated last month
- A program for detection of tRNA genes☆75Updated 3 years ago
- Federating genomes with love (and synteny derived from functional annotations)☆44Updated 7 months ago
- Algorithms to compute DNA complexity☆35Updated 3 years ago
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 5 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated last week
- ☆35Updated last year
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- convert various features into a GFF-like file for use in genome browsers☆72Updated last week