Ensembl / ensembl-comparaLinks
The Ensembl Compara Perl API and SQL schema
☆53Updated this week
Alternatives and similar repositories for ensembl-compara
Users that are interested in ensembl-compara are comparing it to the libraries listed below
Sorting:
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆80Updated 7 months ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Python programs for processing GFF3 files☆98Updated last year
- Coding Genome Reconstruction using Iso-Seq data☆61Updated 3 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 3 months ago
- A fully automated gene annotator from RNA-Seq expression data☆61Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆50Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆106Updated 3 weeks ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆55Updated 5 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- Same species annotation lift over pipeline.☆98Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 2 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆86Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- A fork of exonerate: a generic tool for sequence alignment☆67Updated last year
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆107Updated last year
- de novo assembly of RNA-seq data using ABySS☆34Updated last year
- Research release basecalling models and configurations☆114Updated last month
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆58Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆62Updated last year
- ☆35Updated 2 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- ☆43Updated 10 months ago