Ensembl / Bio-DB-HTSLinks
Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib
☆25Updated 8 months ago
Alternatives and similar repositories for Bio-DB-HTS
Users that are interested in Bio-DB-HTS are comparing it to the libraries listed below
Sorting:
- 10x Genomics Reads Simulator☆45Updated last year
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Updated 7 years ago
- Algorithms to compute DNA complexity☆34Updated 3 years ago
- Tools for querying and analysis of genomic data☆27Updated 3 weeks ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Structural Variant Index☆75Updated 9 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated 2 weeks ago
- Structural variant caller☆55Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Assembly Based ReAligner☆74Updated 7 years ago
- Adapters for trimming☆30Updated 6 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 5 months ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- ☆31Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆51Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 11 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Detect novel (and reference) STR expansions from short-read data☆67Updated 2 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago