Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib
☆26Jan 7, 2025Updated last year
Alternatives and similar repositories for Bio-DB-HTS
Users that are interested in Bio-DB-HTS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Ensembl Variation Perl API and SQL schema☆30May 12, 2026Updated 2 weeks ago
- A C library for handling bigWig files☆81Jan 17, 2025Updated last year
- Tools for querying and analysis of genomic data☆27Oct 26, 2025Updated 7 months ago
- File parsing and writing code for Ensembl☆10Apr 9, 2026Updated last month
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Algorithms to compute DNA complexity☆35May 24, 2022Updated 4 years ago
- A Perl Semantic Web Framework☆19May 8, 2026Updated 2 weeks ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆83Apr 24, 2025Updated last year
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- Embeding a fast C compiler directly into your Perl parser☆30May 17, 2018Updated 8 years ago
- Fastq compression tool☆17Dec 2, 2019Updated 6 years ago
- The BioPerl Web site: http://bioperl.org☆14Aug 29, 2019Updated 6 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆178Jan 7, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 2 months ago
- Perl module for DigitalOcean's RESTful API☆11Apr 16, 2018Updated 8 years ago
- SQLite driver for Perl5 DBI☆31Jan 2, 2026Updated 4 months ago
- Build external dependencies for use in CPAN☆17Aug 4, 2025Updated 9 months ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 5 months ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆23Nov 22, 2019Updated 6 years ago
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 5 months ago
- Perl class for direct graph data structures and algorithms☆23Mar 27, 2025Updated last year
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- Use DBIC::DeploymentHandler and DBIC::Fixtures together for a sane database versioning workflow☆34Jun 27, 2025Updated 10 months ago
- version agnostic Perl bindings for zeromq☆24Aug 4, 2023Updated 2 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- Manage your own DarkPAN☆33Dec 8, 2011Updated 14 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Python language bindings for bwa☆12Mar 27, 2026Updated last month
- The Ensembl Core Perl API and SQL schema☆83Apr 7, 2026Updated last month
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆33Mar 23, 2026Updated 2 months ago
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Mojolicious and Async MySQL☆26Oct 30, 2025Updated 6 months ago