Ensembl / Bio-DB-HTS
Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib
☆24Updated 4 months ago
Alternatives and similar repositories for Bio-DB-HTS
Users that are interested in Bio-DB-HTS are comparing it to the libraries listed below
Sorting:
- 10x Genomics Reads Simulator☆45Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- The Ensembl Variation Perl API and SQL schema☆28Updated 2 weeks ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Tools for querying and analysis of genomic data☆27Updated 5 months ago
- Assembly Based ReAligner☆73Updated 6 years ago
- ☆51Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Structural Variant Index☆72Updated 5 months ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Algorithms to compute DNA complexity☆34Updated 2 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆52Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Adapters for trimming☆30Updated 6 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- ☆78Updated 11 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago