VertebrateResequencing / wr
High performance Workflow Runner
☆30Updated last month
Alternatives and similar repositories for wr:
Users that are interested in wr are comparing it to the libraries listed below
- biogo high throughput sequencing repository☆125Updated 9 months ago
- Bioinformatic infrastructure libraries☆77Updated 4 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 4 years ago
- a pileup library that embraces the huge☆42Updated 4 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆218Updated 3 months ago
- Funnel is a toolkit for distributed task execution via a simple, standard API.☆123Updated this week
- SQL-like query language for the SAM/BAM file format☆26Updated last year
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 3 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 5 years ago
- Lollipop-style mutation diagrams for annotating genetic variations.☆187Updated 3 months ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Interval data structure☆229Updated last month
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆31Updated 2 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 11 months ago
- A collection of genomics software tools written in Go (golang).☆83Updated this week
- NGS duplicate marking☆19Updated 3 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- ☆82Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆81Updated 3 months ago
- Flexible genotype query among 30,000+ samples whole-genome☆96Updated 5 years ago
- (WIP) best-practices workflow for rare disease☆59Updated 6 months ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆95Updated last year
- An awk-like VCF parser☆55Updated last year
- Go / Golang Bioinformatics Library☆45Updated 3 months ago
- Query language for filtering SAM/BAM reads☆31Updated 3 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆14Updated 7 years ago