Windowed Adaptive Trimming for fastq files using quality
☆25Feb 25, 2015Updated 11 years ago
Alternatives and similar repositories for sickle
Users that are interested in sickle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 6 years ago
- ☆10Oct 17, 2019Updated 6 years ago
- ☆10Feb 3, 2022Updated 4 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 5 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Mar 30, 2020Updated 5 years ago
- reference-guided aligner for next-generation sequencing technologies☆57Sep 20, 2016Updated 9 years ago
- Overall management and deployment of the BRCA Exchange web portal and pipeline scripts☆27Mar 13, 2026Updated last week
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 3 years ago
- The Ensembl Variation Perl API and SQL schema☆30Updated this week
- ☆15Nov 12, 2017Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆26Oct 31, 2019Updated 6 years ago
- ☆45Jul 7, 2016Updated 9 years ago
- Kraken(2) database based on the GTDB project☆28Dec 20, 2018Updated 7 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- Micro 612 genomics workshop☆38Apr 23, 2021Updated 4 years ago
- GWAS Survival Package in R☆13Nov 16, 2023Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Dec 4, 2018Updated 7 years ago
- DPPDIV☆12Apr 10, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 3 weeks ago
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆34Mar 27, 2024Updated 2 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Sep 11, 2025Updated 6 months ago
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 6 years ago
- A Nextflow workflow for HLA typing using HLA-HD☆14Jul 3, 2024Updated last year
- phylogenetic networks using ggplot2 and ggtree☆13Dec 24, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 5 years ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆16Apr 7, 2024Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago