ucdavis-bioinformatics / sickleLinks
Windowed Adaptive Trimming for fastq files using quality
☆25Updated 10 years ago
Alternatives and similar repositories for sickle
Users that are interested in sickle are comparing it to the libraries listed below
Sorting:
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 3 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆52Updated 7 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated 2 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 5 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 8 years ago
- UCSC Nanopore☆44Updated 6 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- Structural Variant Index☆75Updated last year
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆32Updated 7 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last week
- scripts to parse IrysView output☆39Updated 10 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- An awk-like VCF parser☆56Updated 2 years ago
- Linked-Read Alignment Tool☆26Updated 6 years ago