Ensembl / ensembl-hive

Related projects: ⓘ

• Ensembl / ensembl
  The Ensembl Core Perl API and SQL schema
  ☆79Updated last week
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated last year
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆93Updated 2 weeks ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆80Updated last week
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆96Updated 3 weeks ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• CCDG / Pipeline-Standardization
  ☆81Updated 5 years ago
• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆85Updated last month
• assemblerflow / flowcraft
  FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.
  ☆241Updated 4 years ago
• common-workflow-library / bio-cwl-tools
  CWL CommandLineTool descriptions for biology/life-sciences related applications
  ☆76Updated 2 months ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆75Updated 2 months ago
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆56Updated last week
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆97Updated 3 weeks ago
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆143Updated last year
• hartwigmedical / hmftools
  Various algorithms for analysing genomics data
  ☆189Updated this week
• RealTimeGenomics / rtg-tools
  RTG Tools: Utilities for accurate VCF comparison and manipulation
  ☆288Updated 3 months ago
• hall-lab / svtools
  Tools for processing and analyzing structural variants.
  ☆147Updated 2 years ago
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆250Updated 8 months ago
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆132Updated 4 years ago
• dnanexus / dx-toolkit
  DNAnexus platform client libraries
  ☆90Updated last week
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆187Updated 3 years ago
• broadinstitute / viral-ngs
  Viral genomics analysis pipelines
  ☆188Updated 3 years ago
• brentp / smoove
  structural variant calling and genotyping with existing tools, but, smoothly.
  ☆230Updated 3 months ago
• opencb / biodata
  Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics
  ☆29Updated this week
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 2 years ago
• ncbi / ngs
  NGS Language Bindings
  ☆118Updated 9 months ago
• brentp / slivar
  genetic variant expressions, annotation, and filtering for great good.
  ☆248Updated 3 months ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆122Updated 4 years ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆105Updated 2 months ago