Alternatives and similar repositories for ensembl-hive

Users that are interested in ensembl-hive are comparing it to the libraries listed below

• liyao001 / BioQueue
  A novel pipeline framework to accelerate bioinformatics analysis
  ☆30Updated 2 months ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆80Updated 2 weeks ago
• opencb / opencga
  An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …
  ☆176Updated this week
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆63Updated last week
• KHP-Informatics / ngseasy
  Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
  ☆86Updated 8 years ago
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆151Updated 10 months ago
• CCDG / Pipeline-Standardization
  ☆82Updated 7 years ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated last month
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆76Updated 2 weeks ago
• assemblerflow / flowcraft
  FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.
  ☆245Updated 4 months ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆90Updated last year
• broadinstitute / seqr
  web-based analysis tool for rare disease genomics
  ☆197Updated this week
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆106Updated 3 months ago
• Ensembl / ensembl
  The Ensembl Core Perl API and SQL schema
  ☆83Updated 3 months ago
• broadinstitute / viral-ngs
  [THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble …
  ☆195Updated last year
• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆95Updated last week
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆119Updated last year
• DECIPHER-genomics / Genoverse
  HTML5 scrollable genome browser
  ☆111Updated 2 years ago
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆103Updated 3 months ago
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• arq5x / gemini
  a lightweight db framework for exploring genetic variation.
  ☆323Updated 5 years ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• galaxyproject / planemo
  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…
  ☆95Updated this week
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆137Updated 3 years ago
• WGLab / biocluster
  Tutorial on building a computing cluster for bioinformatics
  ☆88Updated 2 years ago
• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆109Updated 4 years ago
• dcjones / fastq-tools
  Small utilities for working with fastq sequence files.
  ☆123Updated 3 years ago
• Clinical-Genomics / scout
  VCF visualization interface
  ☆175Updated last week