EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
☆56Jan 6, 2026Updated 4 months ago
Alternatives and similar repositories for ensembl-hive
Users that are interested in ensembl-hive are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Ensembl Core Perl API and SQL schema☆83Apr 7, 2026Updated last month
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆18Apr 28, 2026Updated 3 weeks ago
- The Ensembl Compara Perl API and SQL schema☆56May 12, 2026Updated last week
- File parsing and writing code for Ensembl☆10Apr 9, 2026Updated last month
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- OBSOLETE: Prototype Neo4j Knowledge Graph for Coronavirus outbreaks (see NEW VERSION: https://github.com/covid-19-net/covid-19-community)☆18Nov 25, 2020Updated 5 years ago
- Minimal docker image for bwa. Not developed any more.☆11Apr 26, 2015Updated 11 years ago
- The code to run an Ensembl website☆22May 6, 2026Updated 2 weeks ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- The Genomics Tertiary Analysis and Machine Learning Using Amazon SageMaker solution creates a scalable environment in AWS to develop mach…☆11Jul 7, 2023Updated 2 years ago
- HPCNow! training material and hands-on sessions☆19Jul 7, 2022Updated 3 years ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Aug 9, 2016Updated 9 years ago
- Python interface to the GenoLogics LIMS server via its REST API.☆11Mar 30, 2022Updated 4 years ago
- Quality of RNA-Seq Toolset☆52Apr 9, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Quick Read Quality Control☆20Feb 28, 2023Updated 3 years ago
- ☆10Feb 28, 2018Updated 8 years ago
- ☆13Feb 12, 2022Updated 4 years ago
- Ten Simple Rules for Making Research Software More Robust. Manuscript is published at PLoS Computational Biology. Feedback is welcome!☆12Apr 17, 2017Updated 9 years ago
- Client for the Cromwell workflow engine☆17Mar 7, 2024Updated 2 years ago
- ☆16Oct 15, 2025Updated 7 months ago
- ☆20Dec 13, 2023Updated 2 years ago
- Tools for munging genomic data☆21Jul 9, 2019Updated 6 years ago
- Generate and process BAM files from Illumina sequencing instrument files☆23Feb 25, 2016Updated 10 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Common scripts☆15Apr 22, 2026Updated 3 weeks ago
- A tool to search for gadgets, operations, and ROP chains using a backtracking algorithm in a tree-like structure☆19Jun 13, 2023Updated 2 years ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆14Aug 20, 2025Updated 8 months ago
- Python library to handle different kind of operations with the OANDA API☆11Dec 23, 2024Updated last year
- ☆11Nov 21, 2025Updated 5 months ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations☆17Feb 5, 2025Updated last year
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago
- Graph Learning with JAX☆14Jul 11, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Basic Docker Compose template application with Flask, Celery, Redis, MySQL, SocketIO, Nginx and Gunicorn.☆16Nov 26, 2023Updated 2 years ago
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated last year
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆21Nov 7, 2022Updated 3 years ago
- hexagonal binning with triangular sub-binning☆17Jul 27, 2022Updated 3 years ago
- AWS lambda S3 + rust-htslib: A serverless bioinformatics example☆14Jun 7, 2022Updated 3 years ago