Alternatives and similar repositories for ensembl-hive

Users that are interested in ensembl-hive are comparing it to the libraries listed below

• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• liyao001 / BioQueue
  A novel pipeline framework to accelerate bioinformatics analysis
  ☆30Updated last month
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆63Updated 9 years ago
• opencb / opencga
  An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …
  ☆175Updated this week
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆106Updated 2 months ago
• arq5x / gemini
  a lightweight db framework for exploring genetic variation.
  ☆323Updated 5 years ago
• assemblerflow / flowcraft
  FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.
  ☆244Updated 3 months ago
• Ensembl / ensembl
  The Ensembl Core Perl API and SQL schema
  ☆82Updated 2 months ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆117Updated 11 months ago
• Clinical-Genomics / scout
  VCF visualization interface
  ☆173Updated this week
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆60Updated last week
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆79Updated last week
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆90Updated last year
• common-workflow-library / bio-cwl-tools
  CWL CommandLineTool descriptions for biology/life-sciences related applications
  ☆78Updated 8 months ago
• PharmGKB / PharmCAT
  The Pharmacogenomic Clinical Annotation Tool
  ☆149Updated last week
• nh13 / DWGSIM
  Whole Genome Simulator for Next-Generation Sequencing
  ☆101Updated this week
• gatk-workflows / gatk4-data-processing
  Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
  ☆159Updated 3 years ago
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆151Updated 9 months ago
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆63Updated last week
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆207Updated 4 years ago
• galaxyproject / dunovo
  Reference-free duplex sequencing pipeline.
  ☆19Updated 3 years ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆137Updated 2 years ago
• KHP-Informatics / ngseasy
  Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
  ☆86Updated 8 years ago
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆99Updated 6 months ago
• Ensembl / ensembl-rest
  Language agnostic RESTful data access to Ensembl data over HTTP
  ☆148Updated this week
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated 3 weeks ago
• Illumina / Nirvana
  The nimble & robust variant annotator
  ☆188Updated last year
• DECIPHER-genomics / Genoverse
  HTML5 scrollable genome browser
  ☆111Updated 2 years ago
• openwdl / learn-wdl
  Educational materials for learning WDL
  ☆131Updated last year