Alternatives and similar repositories for rare-disease-simulation:

Users that are interested in rare-disease-simulation are comparing it to the libraries listed below

• ncbi-nlp / pubtator-gpt
  ☆19Updated last year
• anergictcell / pyhpo
  A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology
  ☆25Updated 7 months ago
• opentargets / gentropy
  Open Targets python framework for post-GWAS analysis
  ☆34Updated this week
• mikelkou / fava
  Functional Associations using Variational Autoencoders
  ☆39Updated 2 months ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆18Updated last week
• turrogroup / rsvr
  Rareservoir Database Tools
  ☆14Updated last year
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆62Updated last year
• idekerlab / llm_evaluation_for_gene_set_interpretation
  Code space for 'Evaluation of large language models for discovery of gene set function'
  ☆28Updated last month
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆49Updated last week
• bhklab / PharmacoGx
  R package to analyze large-scale pharmacogenomic datasets.
  ☆67Updated last week
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆49Updated 4 months ago
• mims-harvard / SHEPHERD
  SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
  ☆49Updated 4 months ago
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆23Updated 4 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆39Updated this week
• biocypher / biochatter-light
  The light frontend for BioChatter, in pure Python
  ☆50Updated last month
• shenorrLabTRDF / TimeAx
  Multiple trajectory alignment of time-series data
  ☆10Updated last year
• baselmans / multivariate_GWAMA
  Code for multivariate genome wide association meta analysis
  ☆20Updated 5 years ago
• sqjin / CellChatShiny
  Standalone shiny server container for viewing CellChat object
  ☆12Updated 3 years ago
• CSB5 / CaDRReS-Sc
  CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data
  ☆14Updated 2 years ago
• johli / aparent
  APA Regression Net - Predict and Engineer Alternative Polyadenylation
  ☆38Updated 3 years ago
• buenrostrolab / stimATAC_analyses_code
  All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs
  ☆37Updated last year
• elvanov / MOGAMUN
  ☆12Updated 3 years ago
• oscar-franzen / PanglaoDB
  metadata and data from the database
  ☆38Updated 4 years ago
• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆73Updated last year
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆19Updated this week
• ailabstw / scDrug
  scDrug: From scRNA-seq to Drug Repositioning
  ☆30Updated last year
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 3 years ago
• JiaLiVUMC / scMRMA
  ☆15Updated last year
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆31Updated last month
• QuKunLab / MultiomeBenchmarking
  ☆41Updated 11 months ago