A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology
☆28Mar 9, 2025Updated last year
Alternatives and similar repositories for pyhpo
Users that are interested in pyhpo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clinical machine-learning based interpreter of germline mutations.☆11Mar 13, 2025Updated last year
- GREAT algorithm in Python☆16Oct 24, 2022Updated 3 years ago
- Package to serve public and freely-available data from rare disease patients.☆10Jan 3, 2022Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 2 months ago
- Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.☆16Aug 13, 2019Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Extract TNM cancer staging from pathology notes.☆14Aug 2, 2024Updated 2 years ago
- Phenotype driven gene prioritization for HPO☆53Jul 26, 2021Updated 5 years ago
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆85Jul 1, 2025Updated last year
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆14Aug 13, 2026Updated 3 weeks ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- ☆13Feb 2, 2023Updated 3 years ago
- ☆12Jun 19, 2026Updated 2 months ago
- An R package for evaluating phenotype algorithms.☆22Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CNV screening and annotation tool☆25Oct 31, 2016Updated 9 years ago
- Simulate patients with rare genetic conditions☆24Jul 28, 2023Updated 3 years ago
- List of IARC bioinformatics pipelines and resources☆58Apr 23, 2026Updated 4 months ago
- A MatchMaker Exchange server☆12Jun 1, 2026Updated 3 months ago
- Analytics tool that applies Natural Language Processing (NLP) and Machine Learning (ML), such as concept extraction, idea classification,…☆10Dec 7, 2022Updated 3 years ago
- ☆11May 27, 2024Updated 2 years ago
- Introductory workshop teaching python for Data Science and Biomedical Machine Learning☆13May 13, 2022Updated 4 years ago
- HDR UK OSS Contributions☆26Updated this week
- Mutation Identification Pipeline. Read the latest documentation:☆47Nov 18, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A script that gets data from the Twitter real-time API, passes it to a message-queue (e.g. RabbitMQ) and stores tweets into MongoDB☆11Apr 20, 2017Updated 9 years ago
- Frequently used commands in bioinformatics☆59Oct 12, 2024Updated last year
- Repository for development of the genomic module of the CDM.☆26Jun 14, 2019Updated 7 years ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- RNA-seq analysis scripts☆18Jan 8, 2026Updated 7 months ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆49Dec 6, 2024Updated last year
- ☆12Oct 19, 2021Updated 4 years ago
- Research pipeline for exploring clinically relevant genomic variants☆17Jul 20, 2026Updated last month
- ☆10Jan 19, 2019Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆69Sep 13, 2022Updated 3 years ago
- Read fcs files.☆11Nov 13, 2025Updated 9 months ago
- [archived]☆17Aug 13, 2021Updated 5 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆23Feb 17, 2023Updated 3 years ago
- An R package for multivariate adaptive shrinkage.☆101Nov 7, 2024Updated last year
- Code repository for MMUGL: Multi-modal Graph Learning over UMLS Knowledge Graphs☆11Dec 7, 2023Updated 2 years ago
- Footnotes Block Tune for Editor.js☆11Aug 24, 2021Updated 5 years ago