A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology
☆29Mar 9, 2025Updated last year
Alternatives and similar repositories for pyhpo
Users that are interested in pyhpo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build contrasts for models defined with formulaic☆12Updated this week
- structural variant database software☆48Feb 16, 2026Updated last month
- ☆34Jan 11, 2025Updated last year
- GREAT algorithm in Python☆14Oct 24, 2022Updated 3 years ago
- A port of biocommons/hgvs to the Rust programming language☆17Mar 16, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Package to serve public and freely-available data from rare disease patients.☆10Jan 3, 2022Updated 4 years ago
- Clinical machine-learning based interpreter of germline mutations.☆11Mar 13, 2025Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 2 months ago
- Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.☆16Aug 13, 2019Updated 6 years ago
- Extract TNM cancer staging from pathology notes.☆14Aug 2, 2024Updated last year
- Phenotype driven gene prioritization for HPO☆52Jul 26, 2021Updated 4 years ago
- ☆15Oct 10, 2023Updated 2 years ago
- Exploring ethical and practical applications of LLMs in the NHS / health☆13May 9, 2024Updated last year
- 3D GWAS across multiple phenotypes☆13Oct 11, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Simulate patients with rare genetic conditions☆24Jul 28, 2023Updated 2 years ago
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆79Jul 1, 2025Updated 8 months ago
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆13Mar 4, 2026Updated 3 weeks ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- ☆21Aug 30, 2022Updated 3 years ago
- An R package for evaluating phenotype algorithms.☆22Nov 20, 2025Updated 4 months ago
- CNV screening and annotation tool☆25Oct 31, 2016Updated 9 years ago
- Semantic query and text mining tool☆21Oct 31, 2023Updated 2 years ago
- ☆11May 27, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- RNA-seq analysis scripts☆16Jan 8, 2026Updated 2 months ago
- List of IARC bioinformatics pipelines and resources☆56Mar 18, 2026Updated last week
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- A MatchMaker Exchange server☆12Updated this week
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- HDR UK OSS Contributions☆25Mar 6, 2025Updated last year
- Mutation Identification Pipeline. Read the latest documentation:☆47Nov 18, 2025Updated 4 months ago
- ☆10Aug 13, 2025Updated 7 months ago
- A script that gets data from the Twitter real-time API, passes it to a message-queue (e.g. RabbitMQ) and stores tweets into MongoDB☆11Apr 20, 2017Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆28Feb 13, 2026Updated last month
- Frequently used commands in bioinformatics☆58Oct 12, 2024Updated last year
- Phenotype-based Diagnosis Tool for Rare Diseases☆13Mar 2, 2026Updated 3 weeks ago
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆18Updated this week
- Code repository for MMUGL: Multi-modal Graph Learning over UMLS Knowledge Graphs☆11Dec 7, 2023Updated 2 years ago
- Kodluyoruz Front-End Eğitimi☆10Sep 11, 2021Updated 4 years ago
- Read fcs files.☆12Nov 13, 2025Updated 4 months ago