Alternatives and similar repositories for pyhpo

Users that are interested in pyhpo are comparing it to the libraries listed below

• stormliucong / doc2hpo
  ☆33Updated last year
• bio-ontology-research-group / phenomenet-vp
  A phenotype-based tool for variant prioritization in WES and WGS data
  ☆41Updated 3 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆90Updated 2 months ago
• bcgsc / pori
  Platform for Oncogenomic Reporting and Interpretation (PORI)
  ☆35Updated last month
• WGLab / CancerVar
  Clinical interpretation of somatic mutations in cancer
  ☆50Updated 10 months ago
• dceoy / pdbio
  Pandas-based Data Handler for VCF, BED, and SAM Files
  ☆32Updated 4 years ago
• TheJacksonLaboratory / LIRICAL
  LIkelihood Ratio Interpretation of Clinical AbnormaLities
  ☆32Updated last month
• ncbi / tmVar3
  ☆21Updated 2 years ago
• WGLab / phenolyzer
  phenotype-based prioritization of candidate genes for human diseases
  ☆65Updated 2 years ago
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 3 years ago
• furkanmtorun / gnomad_python_api
  [deprecated] 🧬 Python API to fetch gnomAD data
  ☆23Updated 4 years ago
• biothings / mygene.info
  MyGene.info: A BioThings API for gene annotations
  ☆130Updated 4 months ago
• ketringjoni / SuPreMo
  Pipeline for generating reference and perturbed sequences for input into predictive models.
  ☆11Updated last year
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆29Updated 5 months ago
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆115Updated 4 years ago
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆15Updated 4 years ago
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆32Updated last year
• gagneurlab / MMSplice_MTSplice
  Tissue-specific variant effect predictions on splicing
  ☆42Updated 2 years ago
• ga4gh / va-spec
  An information model for representing variant annotations.
  ☆25Updated last week
• PGDX / cerebro-paper
  ☆23Updated 7 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆57Updated 5 years ago
• lwgray / pyEntrezId
  Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id
  ☆47Updated 2 years ago
• ncbi / GNorm2
  ☆26Updated last year
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆52Updated 6 years ago
• johli / aparent
  APA Regression Net - Predict and Engineer Alternative Polyadenylation
  ☆40Updated 4 years ago
• Illumina / PrimateAI-3D
  ☆72Updated last month
• mikelkou / fava
  Functional Associations using Variational Autoencoders
  ☆43Updated last month
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆46Updated 9 years ago
• tudorgroza / fast_hpo_cr
  ☆15Updated 7 months ago