cBioPortal / oncotree
☆41Updated this week
Alternatives and similar repositories for oncotree:
Users that are interested in oncotree are comparing it to the libraries listed below
- Central repository for the VICC metakb web application☆15Updated last week
- Backend server for Genome Nexus☆41Updated last week
- GA4GH Variation Representation Python Implementation☆52Updated 2 weeks ago
- Extensible specification for representing and uniquely identifying biological sequence variation☆82Updated last week
- ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov…☆73Updated last month
- Python library for extracting HPO encoded phenotypes from text☆27Updated 8 months ago
- LIkelihood Ratio Interpretation of Clinical AbnormaLities☆24Updated 6 months ago
- MyGene.info: A BioThings API for gene annotations☆119Updated this week
- Clinical interpretation of somatic mutations in cancer☆44Updated 2 years ago
- Associations of genomic features, drugs and diseases☆48Updated 2 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆25Updated 5 years ago
- A modular annotation tool for genomic variants☆116Updated last month
- ☆23Updated 6 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆62Updated 2 months ago
- phenotype-based prioritization of candidate genes for human diseases☆65Updated last year
- Phenotype driven gene prioritization for HPO☆45Updated 3 years ago
- ☆31Updated this week
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Updated 2 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆57Updated this week
- A phenotype-based tool for variant prioritization in WES and WGS data☆37Updated 2 years ago
- An information model for representing variant annotations.☆18Updated this week
- Official repository for GDC User Guides in Markdown format☆60Updated this week
- HGVS variant nomenclature checker☆98Updated last year
- ☆31Updated last week
- Repository for the GA4GH phenopacket schema☆80Updated 3 months ago
- Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.☆18Updated last month
- Annotates variants in MAF with OncoKB annotation.☆126Updated 3 months ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 5 years ago
- Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq☆18Updated 2 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆36Updated last year