☆52Aug 28, 2026Updated this week
Alternatives and similar repositories for oncotree
Users that are interested in oncotree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆37Jan 2, 2024Updated 2 years ago
- Computational Biology Summer Program Hackathon☆14Jun 12, 2026Updated 2 months ago
- CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer☆31Updated this week
- ☆21Jul 3, 2019Updated 7 years ago
- Semantic search engine for OHDSI vocabulary☆20Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov…☆84Jun 30, 2026Updated 2 months ago
- ☆11Aug 3, 2023Updated 3 years ago
- HGVS variant nomenclature checker☆99May 1, 2023Updated 3 years ago
- Developer project for getting basic API integrations working in under 5 minutes☆11May 22, 2026Updated 3 months ago
- ☆13Aug 6, 2019Updated 7 years ago
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- notebook repository☆12Jan 17, 2022Updated 4 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- ☆71Feb 27, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Makes distinct TSS of each gene from a Gencode annotation☆10Oct 19, 2016Updated 9 years ago
- Scripts to load the GDELT data set into MongoDB☆14Dec 8, 2022Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆26Oct 6, 2020Updated 5 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆274Sep 21, 2025Updated 11 months ago
- OBO Library edition of NCIt☆25Aug 6, 2025Updated last year
- ☆10May 26, 2022Updated 4 years ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆16Jul 7, 2026Updated last month
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 4 years ago
- Machine learning model for predicting Human Oral Bioavailability☆13Dec 16, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆36Mar 18, 2026Updated 5 months ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆37May 14, 2026Updated 3 months ago
- A Boolean Algebra for Genetic Variants☆14Aug 24, 2026Updated last week
- An NLP pipeline for COVID-19 surveillance used in the Department of Veterans Affairs Biosurveillance.☆15Oct 20, 2022Updated 3 years ago
- Frontend for Anthropic token counting API. Check the token counts of text, text files, PDFs, and images. Compare token count vs. Gemini a…☆19Jul 12, 2026Updated last month
- Pipe network flow analysis toolkit☆18May 24, 2018Updated 8 years ago
- A crate for working with genomics chain files.☆15Jul 20, 2026Updated last month
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- Lightweight, portable variation registration and retrieval☆17Aug 24, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The C. elegans transcriptome at single cell resolution☆11Mar 28, 2018Updated 8 years ago
- Converts a CSV data file exported from REDCap into the NACC's UDS3 fixed-width format.☆10Aug 5, 2025Updated last year
- Annotates variants in MAF with OncoKB annotation.☆147Aug 25, 2026Updated last week
- MatchMiner: An open source computational platform for matching genomic profiles to precision cancer medicine clinical trials☆52Oct 11, 2022Updated 3 years ago
- 🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019☆18Jul 31, 2019Updated 7 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆27Nov 16, 2016Updated 9 years ago
- Assembly Based ReAligner☆75May 24, 2018Updated 8 years ago