Alternatives and similar repositories for COMET

Users that are interested in COMET are comparing it to the libraries listed below

• epigenelabs / pyComBat
  pyComBat is a Python 3 implementation of ComBat, one of the most widely used tool for correcting technical biases, called batch effects, …
  ☆89Updated last year
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆110Updated last year
• lanagarmire / DeepProg
  Deep-Learning framework for multi-omic and survival data integration
  ☆86Updated 2 years ago
• ArnovanHilten / GenNet
  Framework for Interpretable Neural Networks
  ☆114Updated 10 months ago
• RasmussenLab / MOVE
  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
  ☆90Updated last year
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆53Updated 5 months ago
• ncbi-nlp / GeneAgent
  The code for gene set analysis by accessing domain databases
  ☆97Updated last month
• miargentieri / proteomic-age-ukb
  ☆51Updated 6 months ago
• ArcInstitute / SRAgent
  LLM agents for working with the SRA and associated bioinformatics databases.
  ☆149Updated 2 months ago
• hamiltonoh / organage
  A package to estimate biological organ age using SomaScan plasma proteomics data
  ☆64Updated last year
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆56Updated 3 years ago
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆124Updated 2 weeks ago
• AI4SCR / ATHENA
  ☆35Updated this week
• czi-ai / transcriptformer
  ☆100Updated 3 months ago
• gregbellan / Stabl
  ☆68Updated last year
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆58Updated 8 months ago
• ratschlab / DeepSpot
  DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images
  ☆63Updated this week
• bio-learn / biolearn
  Machine learning tools for biomarker analysis
  ☆77Updated last week
• itmoon7 / onconpc
  Clinical sequencing-based primary site classifier
  ☆38Updated last year
• suinleelab / contrastiveVI
  ☆60Updated last year
• nitzanlab / biolord
  ☆90Updated last year
• instadeepai / multiomics-open-research
  BulkRNABert and MOJO
  ☆32Updated 6 months ago
• daniel-munro / imageCCA
  Code for preparing and running the imageCCA method.
  ☆20Updated 8 years ago
• rsinghlab / pyaging
  A Python-based compendium of GPU-optimized aging clocks.
  ☆119Updated 3 weeks ago
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆62Updated last week
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆117Updated 3 weeks ago
• arnor-sigurdsson / EIR
  A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.
  ☆42Updated last month
• EBISPOT / EFO-UKB-mappings
  ☆18Updated 6 years ago
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago