NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
☆56Apr 4, 2022Updated 4 years ago
Alternatives and similar repositories for NuCLS
Users that are interested in NuCLS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆182Apr 1, 2022Updated 4 years ago
- Repository for ICCV2021 MCSpatNet: Multi-Class Cell Detection Using Spatial Context Representation☆27Jun 27, 2023Updated 3 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆540Updated this week
- ☆16Nov 3, 2023Updated 2 years ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆28Feb 6, 2026Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- [MICCAI'23] HIGT: Hierarchical Interaction Graph-Transformer for Whole Slide Image Analysis☆32Sep 14, 2024Updated last year
- Robust quad-tree based registration on whole slide images☆20Apr 2, 2025Updated last year
- A Girder plugin for pathology image annotations and analysis.☆81Updated this week
- CoNIC Challenge☆69Feb 19, 2024Updated 2 years ago
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆389Jul 23, 2025Updated 11 months ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆272Dec 23, 2023Updated 2 years ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆33Apr 9, 2024Updated 2 years ago
- ☆12Jan 18, 2023Updated 3 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆139Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆72Sep 23, 2024Updated last year
- source code of Inter-MIL: self-interactive multi-instance learning☆17Aug 1, 2023Updated 2 years ago
- Library for Digital Pathology Image Processing☆462Jul 13, 2026Updated last week
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆117Nov 8, 2025Updated 8 months ago
- ☆23Dec 20, 2022Updated 3 years ago
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆730Oct 27, 2023Updated 2 years ago
- Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images☆31Jun 9, 2025Updated last year
- Evaluation code for the PanNuke dataset☆31Oct 20, 2020Updated 5 years ago
- A tool for training machine-learning models with whole-slide imaging datasets☆26Dec 27, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pretrained model for self supervised histopathology☆121Jun 27, 2022Updated 4 years ago
- A Python toolkit for pathology image analysis algorithms.☆479Jun 22, 2026Updated 3 weeks ago
- Training/Evaluation code for HoVer-NeXt☆18Nov 2, 2025Updated 8 months ago
- Data and code to accompany our Nature publication☆49May 3, 2022Updated 4 years ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆184Nov 1, 2021Updated 4 years ago
- ☆46Apr 12, 2023Updated 3 years ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆142Aug 5, 2021Updated 4 years ago
- H&E histopathological staining normalization☆112Jan 24, 2020Updated 6 years ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Jan 29, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆172Jan 29, 2024Updated 2 years ago
- Inference code for HoVer-NeXt☆51Oct 26, 2025Updated 8 months ago
- This repository includes the codes and descriptions to create a fully annotated dataset of nuclei from cryosectioned histological samples…☆45Feb 8, 2023Updated 3 years ago
- Tools for computational pathology☆459Updated this week
- ☆32Jan 22, 2021Updated 5 years ago
- ☆16Jan 18, 2023Updated 3 years ago
- ☆216Jul 23, 2025Updated 11 months ago