computationalpathologygroup / pythostitcherLinks
Python tool for stitching histopathology tissue fragments into artificial whole-mounts.
☆23Updated 7 months ago
Alternatives and similar repositories for pythostitcher
Users that are interested in pythostitcher are comparing it to the libraries listed below
Sorting:
- Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.☆11Updated 5 years ago
- An open-source digital pathology based rapid image annotation tool☆86Updated this week
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- ⚡ Open-source software for deep learning-based digital pathology☆138Updated last year
- Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy☆33Updated 10 months ago
- ☆72Updated last month
- Re-stained whole slide image alignment☆35Updated 2 years ago
- A Girder plugin for pathology image annotations and analysis.☆75Updated 2 weeks ago
- 🚀 H2G-Net: Segmentation of breast cancer region from whole slide images☆28Updated 3 months ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆73Updated 9 months ago
- GPU-accelerated stain normalization command line tool☆23Updated 2 years ago
- Framework for registration of sequential digitized histology slices☆28Updated 3 years ago
- Preprocessing module for large histological images☆21Updated 2 years ago
- A Python library of pre- and post-processing tools for applying deep learning to whole-slide images☆21Updated 2 years ago
- Coincides with blogpost for using geojson and shapely☆33Updated 4 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆26Updated 4 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- WSICS☆30Updated 6 years ago
- Python 3 library for the augmentation & normalization of H&E images☆61Updated 3 years ago
- ☆65Updated last year
- ☆36Updated 2 years ago
- ☆46Updated 3 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- QuPath extension for Segment Anything Model (SAM)☆122Updated 3 months ago
- Core components of PathologyGo, the AI assistance system designed for histopathological inference.☆15Updated 5 years ago
- Interactive Segmentation of Nucleus☆66Updated 2 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆130Updated 2 weeks ago
- ☆31Updated 4 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- A pipeline to segment tissue from the background in histological images☆70Updated 2 years ago