computationalpathologygroup / pythostitcher
Python tool for stitching histopathology tissue fragments into artificial whole-mounts.
β20Updated last week
Alternatives and similar repositories for pythostitcher:
Users that are interested in pythostitcher are comparing it to the libraries listed below
- Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.β11Updated 4 years ago
- An open-source digital pathology based rapid image annotation toolβ76Updated this week
- π¬ Code-free deep segmentation for computational pathologyβ53Updated 9 months ago
- β‘ Open-source software for deep learning-based digital pathologyβ131Updated 9 months ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytoplaβ¦β30Updated 3 years ago
- Re-stained whole slide image alignmentβ33Updated last year
- π H2G-Net: Segmentation of breast cancer region from whole slide imagesβ25Updated 4 months ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/β24Updated last month
- A Girder plugin for pathology image annotations and analysis.β68Updated this week
- GPU-accelerated stain normalization command line toolβ19Updated last year
- Coincides with blogpost for using geojson and shapelyβ31Updated 4 years ago
- A simple web application for for viewing and navigating pathology whole-slide-images in your browser.β13Updated last year
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlayβ70Updated 2 months ago
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasksβ24Updated last year
- Pipeline for computational pathologyβ34Updated last year
- Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopyβ30Updated 3 months ago
- A Python library of pre- and post-processing tools for applying deep learning to whole-slide imagesβ18Updated 2 years ago
- β57Updated 6 months ago
- Framework for registration of sequential digitized histology slicesβ28Updated 3 years ago
- β40Updated 3 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.β118Updated this week
- Preprocessing module for large histological imagesβ20Updated last year
- DeeperHistReg - Source Codeβ52Updated 11 months ago
- A pyqt5 widget for viewing whole-slide images with Openslideβ22Updated 7 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifactsβ30Updated last year
- Interactive Segmentation of Nucleusβ61Updated 2 years ago
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application bringsβ¦β28Updated 3 years ago
- π₯ π Blazingly fast pipeline for patch-based classification in whole slide imagesβ68Updated 8 months ago
- β30Updated last week
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentationβ54Updated 2 years ago