computationalpathologygroup / pythostitcherLinks
Python tool for stitching histopathology tissue fragments into artificial whole-mounts.
☆23Updated 5 months ago
Alternatives and similar repositories for pythostitcher
Users that are interested in pythostitcher are comparing it to the libraries listed below
Sorting:
- Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.☆11Updated 4 years ago
- An open-source digital pathology based rapid image annotation tool☆82Updated last month
- 🔬 Code-free deep segmentation for computational pathology☆55Updated last year
- ☆71Updated 2 weeks ago
- Re-stained whole slide image alignment☆35Updated last year
- A Girder plugin for pathology image annotations and analysis.☆74Updated this week
- ⚡ Open-source software for deep learning-based digital pathology☆135Updated last year
- Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy☆32Updated 8 months ago
- 🚀 H2G-Net: Segmentation of breast cancer region from whole slide images☆28Updated last month
- Coincides with blogpost for using geojson and shapely☆33Updated 4 years ago
- ☆35Updated 2 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆36Updated last year
- ☆63Updated 11 months ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated last month
- ☆42Updated 3 years ago
- ☆44Updated 3 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆54Updated 3 years ago
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆24Updated last year
- Framework for registration of sequential digitized histology slices☆28Updated 3 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆79Updated last year
- GPU-accelerated stain normalization command line tool☆22Updated last year
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆72Updated 7 months ago
- QuPath extension for Segment Anything Model (SAM)☆117Updated last month
- DeeperHistReg - Source Code☆69Updated last year
- A simple web application for for viewing and navigating pathology whole-slide-images in your browser.☆15Updated last year
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- WSICS☆30Updated 6 years ago
- Python 3 library for the augmentation & normalization of H&E images☆58Updated 2 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- Pipeline for computational pathology☆38Updated last year