computationalpathologygroup / pythostitcher
Python tool for stitching histopathology tissue fragments into artificial whole-mounts.
☆17Updated last month
Related projects ⓘ
Alternatives and complementary repositories for pythostitcher
- An open-source digital pathology based rapid image annotation tool☆74Updated this week
- Framework for registration of sequential digitized histology slices☆28Updated 2 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- A simple web application for for viewing and navigating pathology whole-slide-images in your browser.☆13Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆52Updated 5 months ago
- A Python library of pre- and post-processing tools for applying deep learning to whole-slide images☆17Updated last year
- A Girder plugin for pathology image annotations and analysis.☆57Updated this week
- 🚀 H2G-Net: Segmentation of breast cancer region from whole slide images☆22Updated 2 weeks ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆22Updated 2 months ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆46Updated 2 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆59Updated 4 months ago
- GPU-accelerated stain normalization command line tool☆19Updated last year
- ☆40Updated 2 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆29Updated 3 years ago
- Coincides with blogpost for using geojson and shapely☆29Updated 4 years ago
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆39Updated 2 months ago
- Re-stained whole slide image alignment☆31Updated last year
- Preprocessing module for large histological images☆18Updated last year
- QuPath extension for Segment Anything Model (SAM)☆92Updated 2 months ago
- Robust quad-tree based registration on whole slide images☆19Updated 5 months ago
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆26Updated 6 months ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆65Updated last year
- ☆43Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated last month
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆18Updated last year
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- ☆25Updated 4 years ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆24Updated last year
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆112Updated 9 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆28Updated 9 months ago