bglnelissen / slideToolkit
slideToolkit: a free toolset for analyzing full size virtual histology slides
☆11Updated 11 months ago
Alternatives and similar repositories for slideToolkit:
Users that are interested in slideToolkit are comparing it to the libraries listed below
- ☆23Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆22Updated 2 years ago
- ☆32Updated last year
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆11Updated last year
- IHC-image analysis workflow☆23Updated 6 years ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆21Updated 4 years ago
- QuPath extension to interactively align images☆23Updated 3 weeks ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- QuPath extension to run StarDist nucleus detection☆39Updated 3 weeks ago
- Pan-cancer quantitative histopathology analysis using deep learning☆11Updated 3 years ago
- Spatial profiling toolbox for spatial characterization of tissue microenvironment (https://oncopathtk.org)☆22Updated this week
- Pan-cancer tils analysis study by Hongming Xu☆13Updated 4 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated last week
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆39Updated 3 weeks ago
- Tool to create images and configuration files for Minerva-Story☆16Updated last month
- The Single-Cell Pathology Landscape of Breast Cancer☆26Updated 5 years ago
- ☆17Updated last year
- ☆11Updated 5 years ago
- Helper functions for working with inForm data.☆14Updated 3 years ago
- ☆15Updated last year
- Piecewise alignment for layers of mosaics☆24Updated 3 weeks ago
- QuPath TIL classifier for Melanoma on HE slides☆9Updated 5 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 3 months ago
- Aligning images acquired with the IBEX microscopy imaging technique☆17Updated 3 months ago
- Intelligent data partitioning using quality control metrics☆18Updated 5 months ago
- The official QuPath extension for InstanSeg☆16Updated last week
- Histology Topography Cytometry Analysis Toolbox☆67Updated last year
- ☆20Updated 3 years ago