bglnelissen / slideToolkitLinks
slideToolkit: a free toolset for analyzing full size virtual histology slides
☆11Updated last year
Alternatives and similar repositories for slideToolkit
Users that are interested in slideToolkit are comparing it to the libraries listed below
Sorting:
- ☆24Updated 2 years ago
- IHC-image analysis workflow☆23Updated 7 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Updated 2 years ago
- Pan-cancer tils analysis study by Hongming Xu☆14Updated 5 years ago
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆42Updated 2 years ago
- ☆33Updated last year
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆22Updated 4 years ago
- Trained models for use with QuPath☆15Updated 4 years ago
- Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)☆22Updated this week
- QuPath extension to interactively align images☆25Updated 2 months ago
- Handling whole-slide images with region-level annotations.☆10Updated 6 years ago
- Tool to create images and configuration files for Minerva-Story☆16Updated 5 months ago
- Pan-cancer quantitative histopathology analysis using deep learning☆12Updated 3 years ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated this week
- QuPath extension to run StarDist nucleus detection☆47Updated 3 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 5 years ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆17Updated 2 months ago
- TCGA BLCA tmb prediction by Hongming Xu☆13Updated 4 years ago
- A Python library for deep learning on whole-slide images☆54Updated 3 years ago
- ☆22Updated 3 years ago
- Helper functions for working with inForm data.☆19Updated 3 years ago
- An open-source digital pathology based rapid image annotation tool☆86Updated 3 weeks ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Updated 5 years ago
- ☆31Updated 4 years ago
- The official QuPath extension for InstanSeg☆27Updated last week
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…☆31Updated 3 years ago
- Convolutional neural networks for extracting a "deep stroma score" from histological images of human cancer☆18Updated 5 years ago