deepathology / fseg
Unsupervised Semantic Segmentation for Pathology
☆15Updated 4 months ago
Alternatives and similar repositories for fseg:
Users that are interested in fseg are comparing it to the libraries listed below
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated last month
- ☆19Updated 2 years ago
- Solid Tumor Associative Modeling in Pathology☆67Updated this week
- GrandQC tool for tissue detection and quality control in pathology☆33Updated 3 weeks ago
- Python 3 library for the augmentation & normalization of H&E images☆52Updated 2 years ago
- Whole Slide image (WSI) conversion for brightfield histology images☆36Updated 3 weeks ago
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images☆31Updated 8 months ago
- Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images☆20Updated 8 months ago
- Pipeline for computational pathology☆34Updated last year
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆42Updated last year
- Multimodal prototyping for cancer survival prediction - ICML 2024☆80Updated last month
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆68Updated 8 months ago
- Tools to build deep learning pipelines.☆96Updated 4 months ago
- 🔬 Code-free deep segmentation for computational pathology☆53Updated 9 months ago
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆11Updated 4 years ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆17Updated 2 weeks ago
- Histopathology Slides Preprocessing Pipeline☆36Updated last week
- A vision language model for gigapixel whole slide images in histopathology☆38Updated 6 months ago
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆25Updated last year
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆29Updated 10 months ago
- A tool for rapidly labeling objects using deep learning feature embedding☆31Updated 7 months ago
- ☆30Updated last week
- ☆14Updated 11 months ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆24Updated 11 months ago
- GraphLSurv: A Scalable Survival Prediction Network with Adaptive and Sparse Structure Learning for Histopathological Whole-Slide Images -…☆11Updated last year
- machine-readable information for the TCGA dataset, mirrored from other sources☆18Updated 2 years ago
- Re-stained whole slide image alignment☆32Updated last year
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆68Updated last year
- Hibou: Foundational Models for Pathology☆68Updated 5 months ago
- End-to-end pipeline to go from raw H&E slides to normalised extracted features for training☆25Updated last year