Alternatives and similar repositories for deepchain-apps:

Users that are interested in deepchain-apps are comparing it to the libraries listed below

• DeepChainBio / bio-datasets
  Free collection of Bio datasets and embeddings
  ☆35Updated 2 years ago
• instadeepai / manyfold
  🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
  ☆78Updated 2 years ago
• DeepChainBio / bio-transformers
  bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
  ☆148Updated last year
• samsinai / FLEXS
  Fitness landscape exploration sandbox for biological sequence design.
  ☆158Updated last year
• lupoglaz / OpenFold2
  Attempt at reproduction of AlphaFold2
  ☆91Updated 3 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆80Updated 5 months ago
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆34Updated 3 years ago
• instadeepai / protein-sequence-bfn
  Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
  ☆21Updated 3 months ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆104Updated last month
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆122Updated 3 years ago
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆52Updated last year
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆58Updated 3 years ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆144Updated last year
• chandar-lab / AMPLIFY
  ☆87Updated 2 months ago
• alex-hh / deep-protein-generation
  ☆56Updated 2 years ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆68Updated 2 weeks ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆43Updated last month
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆88Updated 2 weeks ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆96Updated 4 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆32Updated 2 years ago
• learningmatter-mit / peptimizer
  Peptide optimization with Machine Learning
  ☆70Updated 2 years ago
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆96Updated last year
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆97Updated last month
• Acellera / acegen-open
  Language models for drug discovery using torchrl
  ☆75Updated 2 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆124Updated this week
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆177Updated last month
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆103Updated 6 months ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆186Updated last year
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆95Updated last year
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆82Updated last year