Alternatives and similar repositories for OpenFold2

Users that are interested in OpenFold2 are comparing it to the libraries listed below

• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆119Updated 4 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆150Updated 2 years ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆107Updated last year
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆142Updated 6 months ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 3 years ago
• jproney / AF2Rank
  ☆113Updated 2 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆183Updated 4 years ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆140Updated 2 months ago
• hiranumn / DeepAccNet
  Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.
  ☆90Updated 4 years ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆80Updated 2 years ago
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆124Updated 2 years ago
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆143Updated last year
• aqlaboratory / rgn2
  ☆107Updated last year
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆110Updated last year
• AbSciBio / unlocking-de-novo-antibody-design
  ☆127Updated last year
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆169Updated last year
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆136Updated 11 months ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆97Updated 2 years ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆163Updated 9 months ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆96Updated 6 months ago
• levinthal / Pallatom
  ☆121Updated 4 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆119Updated 7 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆163Updated 3 weeks ago
• gersteinlab / ThermoNet
  ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…
  ☆118Updated last year
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆180Updated 2 months ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆165Updated 2 years ago
• jertubiana / ScanNet
  ☆133Updated 4 months ago
• j3xugit / RaptorX-3DModeling
  Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…
  ☆98Updated 3 years ago
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆97Updated 2 years ago
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆50Updated 2 months ago