Alternatives and similar repositories for bio-datasets

Users that are interested in bio-datasets are comparing it to the libraries listed below

• DeepChainBio / deepchain-apps
  A library for deploying App on deepchain.bio
  ☆30Updated 4 years ago
• DeepChainBio / bio-transformers
  bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
  ☆155Updated last year
• instadeepai / manyfold
  🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
  ☆82Updated 2 years ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆179Updated 2 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆163Updated last year
• samsinai / FLEXS
  Fitness landscape exploration sandbox for biological sequence design.
  ☆168Updated 2 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆215Updated 2 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 3 years ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆119Updated 5 years ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆282Updated last month
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆159Updated 8 months ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆113Updated 2 years ago
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆111Updated last year
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆105Updated 4 months ago
• aqlaboratory / rgn2
  ☆107Updated last year
• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆107Updated last year
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆204Updated 4 months ago
• fhalab / SPGen
  ☆20Updated 4 years ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆114Updated last week
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆270Updated 9 months ago
• lupoglaz / OpenFold2
  Attempt at reproduction of AlphaFold2
  ☆97Updated 11 months ago
• gjoni / trDesign
  trRosetta for protein design
  ☆182Updated 4 years ago
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆237Updated last year
• alex-hh / deep-protein-generation
  ☆59Updated 2 years ago
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆116Updated 3 months ago
• TattaBio / gLM2
  ☆70Updated last year
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆72Updated last month
• microsoft / protein-sequence-models
  ☆253Updated last year
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆164Updated 2 years ago
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆44Updated 2 weeks ago