Alternatives and similar repositories for bio-datasets

Users that are interested in bio-datasets are comparing it to the libraries listed below

• DeepChainBio / deepchain-apps
  A library for deploying App on deepchain.bio
  ☆31Updated 4 years ago
• DeepChainBio / bio-transformers
  bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
  ☆154Updated 2 years ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆185Updated last month
• samsinai / FLEXS
  Fitness landscape exploration sandbox for biological sequence design.
  ☆170Updated 2 years ago
• instadeepai / manyfold
  🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
  ☆81Updated 3 years ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆115Updated 2 years ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆168Updated 2 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆130Updated 4 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆183Updated 4 years ago
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆120Updated last month
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆117Updated last year
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆295Updated 2 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆111Updated 4 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆93Updated 3 months ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆246Updated 3 years ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆151Updated last month
• aqlaboratory / rgn2
  ☆109Updated 2 years ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆78Updated 4 months ago
• lupoglaz / OpenFold2
  Attempt at reproduction of AlphaFold2
  ☆99Updated last year
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆218Updated 2 years ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆122Updated 5 years ago
• brineylab / antiref
  AntiRef: reference clusters of human antibody sequences
  ☆12Updated last year
• TattaBio / gLM2
  ☆77Updated last year
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆111Updated 2 months ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆269Updated last year
• microsoft / protein-sequence-models
  ☆255Updated last year
• alex-hh / deep-protein-generation
  ☆60Updated 3 years ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆167Updated 2 months ago