DeepChainBio / bio-datasets

Related projects: ⓘ

• DeepChainBio / deepchain-apps
  A library for deploying App on deepchain.bio
  ☆27Updated 2 years ago
• DeepChainBio / bio-transformers
  bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
  ☆142Updated 11 months ago
• instadeepai / manyfold
  🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
  ☆74Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆118Updated 2 years ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆132Updated 8 months ago
• samsinai / FLEXS
  Fitness landscape exploration sandbox for biological sequence design.
  ☆152Updated last year
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆167Updated last year
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆59Updated last month
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆100Updated last month
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆142Updated last year
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆141Updated this week
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆97Updated 2 months ago
• lupoglaz / OpenFold2
  Attempt at reproduction of AlphaFold2
  ☆88Updated 2 years ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆54Updated 2 years ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆28Updated 2 years ago
• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆102Updated 2 weeks ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆109Updated 2 months ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆151Updated last month
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆56Updated 3 years ago
• rmrao / evo
  Mono-repo for protein utilities.
  ☆16Updated 2 years ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆78Updated 2 weeks ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆174Updated last month
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆71Updated 3 years ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. https…
  ☆60Updated this week
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆59Updated 7 years ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆95Updated last month
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆80Updated this week
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆153Updated 2 months ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆88Updated 7 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆94Updated last year