Alternatives and similar repositories for bio-datasets

Users that are interested in bio-datasets are comparing it to the libraries listed below

• DeepChainBio / deepchain-apps
  A library for deploying App on deepchain.bio
  ☆30Updated 3 years ago
• DeepChainBio / bio-transformers
  bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
  ☆149Updated last year
• instadeepai / manyfold
  🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
  ☆81Updated 2 years ago
• TattaBio / gLM2
  ☆64Updated 7 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆65Updated 7 years ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆62Updated 3 years ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆55Updated 3 months ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆125Updated 3 years ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆86Updated 10 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆151Updated last year
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆108Updated 2 years ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆72Updated last year
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆27Updated 4 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆107Updated last year
• alex-hh / deep-protein-generation
  ☆58Updated 2 years ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆96Updated 2 weeks ago
• fhalab / SPGen
  ☆19Updated 4 years ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated 4 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆120Updated 3 weeks ago
• rmrao / evo
  Mono-repo for protein utilities.
  ☆18Updated 3 years ago
• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆107Updated 9 months ago
• Rostlab / VESPA
  VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5…
  ☆31Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆59Updated 2 years ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆56Updated 5 months ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆103Updated last year
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆139Updated 4 months ago
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆112Updated 2 weeks ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆84Updated 3 months ago