DeepChainBio / bio-transformersLinks
bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
☆154Updated last year
Alternatives and similar repositories for bio-transformers
Users that are interested in bio-transformers are comparing it to the libraries listed below
Sorting:
- ☆252Updated last year
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆129Updated 3 years ago
- AbLang: A language model for antibodies☆146Updated last year
- trRosetta for protein design☆182Updated 4 years ago
- Compressing protein structures effectively with torsion angles☆174Updated 3 weeks ago
- ☆107Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆73Updated 4 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆104Updated 10 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆102Updated 4 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆156Updated last year
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆159Updated 2 years ago
- Efficient evolution from protein language models☆212Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆198Updated 3 months ago
- 🧬 ManyFold: An efficient and flexible library for training and validating protein folding models☆82Updated 2 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆118Updated 3 years ago
- Generative Language Modeling for Antibody Design☆161Updated 10 months ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆88Updated 2 years ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆163Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆263Updated last year
- Attempt at reproduction of AlphaFold2☆97Updated 10 months ago
- ☆123Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆266Updated 7 months ago
- A package to predict protein inter-residue geometries from sequence data☆215Updated 3 years ago
- ☆58Updated 2 years ago
- Improved antibody structure-based design using inverse folding☆131Updated last week
- ☆113Updated last year
- ☆192Updated 3 years ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆117Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆117Updated 5 months ago