Alternatives and similar repositories for atlas:

Users that are interested in atlas are comparing it to the libraries listed below

• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆30Updated 3 weeks ago
• CAVEconnectome / nglui
  ☆10Updated 2 months ago
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated 5 months ago
• ntustison / ANTsXMouseBrainMapping
  The ANTsX Ecosystem for Mapping the Mouse Brain
  ☆11Updated 2 months ago
• INCF / neuroscience-data-structure
  Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …
  ☆21Updated last year
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆23Updated last year
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆39Updated last week
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated last year
• cuntzlab / treestoolbox
  TREES toolbox
  ☆27Updated 6 months ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆21Updated this week
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 8 months ago
• styx-api / niwrap
  ☆12Updated last week
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆21Updated last week
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated 3 weeks ago
• bkntr / brainways
  Brainways
  ☆16Updated 3 weeks ago
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated 3 weeks ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 4 years ago
• nipy / nitransforms
  a standalone fork of nipy/nibabel#656
  ☆30Updated 2 months ago
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 4 years ago
• brainglobe / brainreg-napari
  Automated 3D brain registration in napari with support for multiple species and atlases.
  ☆16Updated last year
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆15Updated last year
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 2 years ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated 11 months ago
• cogilab / AMaSiNe
  Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…
  ☆14Updated 2 years ago
• NeurodataWithoutBorders / nwbwidgets
  Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.
  ☆48Updated 3 weeks ago
• int-brain-lab / ibl-neuropixel
  Collection of tools to handle Neuropixel 1.0 and 2.0 data
  ☆13Updated 2 weeks ago
• IBT-FMI / mouse-brain-templates
  Generate a package-manager-friendly mouse brain atlases collection.
  ☆21Updated last year
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆30Updated this week
• brainglobe / napari-brainreg
  Visualise brainreg registration output
  ☆10Updated 3 years ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆23Updated this week