Alternatives and similar repositories for Deep_widefield_cal_inferece

Users that are interested in Deep_widefield_cal_inferece are comparing it to the libraries listed below

• churchlandlab / WidefieldImager
  Pre-processing pipeline for widefield data
  ☆12Updated 4 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆52Updated 2 years ago
• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆152Updated 3 years ago
• churchlandlab / wfield
  Tools to process widefield data
  ☆12Updated 4 years ago
• cabooster / DeepCAD-RT
  DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning
  ☆121Updated 5 months ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆32Updated 5 years ago
• adamcohenlab / invivo-imaging
  Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)
  ☆15Updated 2 years ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆81Updated 10 months ago
• yuanlong-o / RUSH3D
  ☆13Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated 11 months ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆62Updated last year
• NICALab / SUPPORT
  Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
  ☆89Updated 2 months ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆46Updated 2 years ago
• llerussell / Naparm
  Control and design of two-photon photostimulation experiments
  ☆17Updated last year
• flatironinstitute / CaImAn-MATLAB
  Complete Matlab pipeline for large scale calcium imaging data analysis
  ☆258Updated 2 years ago
• MouseLand / suite2p
  cell detection in calcium imaging recordings
  ☆407Updated 2 months ago
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆17Updated 2 months ago
• vazirilab / SID
  Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)
  ☆28Updated 5 years ago
• gardner-lab / FinchScope
  Single photon tools for Neuroscience
  ☆36Updated this week
• YijunBao / Shallow-UNet-Neuron-Segmentation_SUNS
  ☆17Updated 2 years ago
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆147Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• MouseLand / rastermap
  a visualization method for neural data
  ☆238Updated 6 months ago
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆13Updated last month
• ninehundred1 / CalciumSignalExtract
  Extract regions of interest based on correlated pixel intensity
  ☆24Updated 8 years ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆152Updated 2 weeks ago
• Aharoni-Lab / Miniscope-LFOV
  Large field-of-view miniature microscope for rats and larger animals.
  ☆17Updated 2 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆142Updated 3 months ago
• zhoupc / OASIS_matlab
  ☆40Updated 4 years ago