tingzhao / neutube

Related projects ⓘ

Alternatives and complementary repositories for neutube

• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆51Updated 4 years ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆48Updated last week
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆51Updated 6 months ago
• nel-lab / FIOLA
  ☆31Updated last year
• cuntzlab / treestoolbox
  TREES toolbox
  ☆27Updated last month
• zhoupc / OASIS_matlab
  ☆33Updated 3 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆45Updated last year
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆42Updated this week
• albert597 / TRAILMAP
  ☆45Updated 4 years ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆43Updated last year
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆23Updated 5 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆28Updated 4 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆123Updated last week
• PrincetonUniversity / lightsheet_helper_scripts
  ☆10Updated last year
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆58Updated last year
• brainglobe / brainglobe-atlasapi
  A lightweight python module to interact with atlases for systems neuroscience
  ☆127Updated this week
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆112Updated last month
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆15Updated 3 weeks ago
• phflot / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆21Updated 3 months ago
• NTCColumbia / moco
  motion correction
  ☆16Updated last year
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆24Updated 2 years ago
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 6 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆75Updated last week
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆123Updated 3 weeks ago
• JaneliaMLCourse / JaneliaMLCourse
  ☆19Updated 6 years ago
• ankilab / DeepD3
  ☆20Updated 3 months ago
• YijunBao / Shallow-UNet-Neuron-Segmentation_SUNS
  ☆17Updated last year
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆43Updated last year
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 3 years ago
• SainsburyWellcomeCentre / masiv
  MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data
  ☆13Updated 4 years ago