DasLab / arnieLinks
Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
☆104Updated 3 months ago
Alternatives and similar repositories for arnie
Users that are interested in arnie are comparing it to the libraries listed below
Sorting:
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆49Updated last year
- A Python package for extracting protein sequence features☆59Updated 3 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆22Updated last year
- Draw RNA secondary structures in python.☆48Updated 2 months ago
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- ☆40Updated 8 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆102Updated 4 years ago
- ☆110Updated 3 years ago
- ☆21Updated last year
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆155Updated last year
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆66Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆73Updated 4 years ago
- Arnie-based DegScore tool.☆26Updated 2 years ago
- ☆107Updated last year
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106Updated 3 months ago
- A Python Tool for Benchmarking Ontological Classification Methods☆43Updated last week
- DeepGO with Fuzzy DL☆31Updated 2 years ago
- Primary RNA sequence model☆38Updated last year
- Evolutionary velocity with protein language models☆94Updated last year
- ☆36Updated 7 months ago
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆179Updated last year
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆113Updated last year
- A generative latent variable model for biological sequence families.☆233Updated 3 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Feature Extraction Package for Biological Sequences☆64Updated last month
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 8 months ago
- Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)☆80Updated 3 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago