DasLab / arnie
Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
☆103Updated 2 months ago
Alternatives and similar repositories for arnie
Users that are interested in arnie are comparing it to the libraries listed below
Sorting:
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆47Updated last year
- A Python package for extracting protein sequence features☆59Updated 2 years ago
- ☆34Updated 5 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago
- Draw RNA secondary structures in python.☆48Updated 8 months ago
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆102Updated 3 years ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- ☆27Updated last month
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆117Updated last year
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆20Updated last year
- ☆53Updated last year
- ☆29Updated 2 years ago
- ☆106Updated last year
- ☆109Updated 3 years ago
- ☆21Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 4 years ago
- Public repository describing training and testing of AntiBERTa.☆59Updated 2 years ago
- Protein design and variant prediction using autoregressive generative models☆100Updated last year
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆107Updated last year
- ☆36Updated 4 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆63Updated last year
- Evolutionary velocity with protein language models☆90Updated last year
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆58Updated 10 months ago
- Arnie-based DegScore tool.☆25Updated 2 years ago
- Efficient evolution from protein language models☆200Updated last year
- Reimplementation of the UniRep protein featurization model.☆106Updated 8 months ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆113Updated last year
- A Python Tool for Benchmarking Ontological Classification Methods☆40Updated 11 months ago
- Primary RNA sequence model☆38Updated 11 months ago