DasLab / arnieLinks
Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
☆103Updated 3 weeks ago
Alternatives and similar repositories for arnie
Users that are interested in arnie are comparing it to the libraries listed below
Sorting:
- A Python package for extracting protein sequence features☆59Updated 2 years ago
- Draw RNA secondary structures in python.☆48Updated this week
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆48Updated last year
- Multi-task and masked language model-based protein sequence embedding models.☆102Updated 4 years ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆64Updated last year
- ☆39Updated 6 months ago
- Evolutionary velocity with protein language models☆93Updated last year
- DeepGO with Fuzzy DL☆30Updated 2 years ago
- ☆54Updated last year
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- ☆23Updated 2 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆21Updated last year
- Arnie-based DegScore tool.☆26Updated 2 years ago
- Public repository describing training and testing of AntiBERTa.☆59Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 4 years ago
- ☆109Updated 3 years ago
- ☆29Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago
- ☆107Updated last year
- A Python Tool for Benchmarking Ontological Classification Methods☆40Updated last year
- Primary RNA sequence model☆38Updated last year
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆39Updated 11 months ago
- Open source code for AlphaFold to extract protein embeddings☆26Updated 3 years ago
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆151Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆37Updated 2 months ago
- PaccMann models for protein language modeling☆42Updated 3 years ago
- ☆31Updated 2 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 6 months ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆117Updated last year