DasLab / arnieLinks
Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
☆104Updated 3 months ago
Alternatives and similar repositories for arnie
Users that are interested in arnie are comparing it to the libraries listed below
Sorting:
- A Python package for extracting protein sequence features☆61Updated 3 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆50Updated last year
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆74Updated 4 years ago
- Draw RNA secondary structures in python.☆48Updated 3 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆103Updated 4 years ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆69Updated 2 years ago
- ☆110Updated 3 years ago
- ☆40Updated 9 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆142Updated 2 months ago
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆155Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 5 years ago
- ☆108Updated last year
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆22Updated 2 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆113Updated last year
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated 2 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Feature Extraction Package for Biological Sequences☆65Updated 2 months ago
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year
- ☆48Updated 9 months ago
- ☆36Updated 8 months ago
- Evolutionary velocity with protein language models☆94Updated last year
- ☆23Updated last year
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆33Updated 3 weeks ago
- Neural networks for deep mutational scanning data☆69Updated 3 months ago
- ☆73Updated 5 months ago
- Primary RNA sequence model☆38Updated last year
- Deep networks for protein functional inference☆177Updated 3 months ago
- ☆127Updated 4 years ago