Shujun-He / Nucleic-Transformer
☆21Updated 2 years ago
Alternatives and similar repositories for Nucleic-Transformer:
Users that are interested in Nucleic-Transformer are comparing it to the libraries listed below
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆99Updated 3 years ago
- ☆29Updated 2 years ago
- DeepGO with Fuzzy DL☆30Updated 2 years ago
- Primary RNA sequence model☆35Updated 10 months ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆47Updated last year
- A repository for neural representational learning of RNA secondary structures☆31Updated 5 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆61Updated last year
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆30Updated 3 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 3 months ago
- A Python package for extracting protein sequence features☆58Updated 2 years ago
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆39Updated 8 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 7 months ago
- PaccMann models for protein language modeling☆42Updated 3 years ago
- ☆51Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 11 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 4 years ago
- ☆20Updated 8 months ago
- ☆67Updated last year
- A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences☆94Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 7 months ago
- Analysis and figure code from Alley et al. 2019.☆58Updated 2 years ago
- ☆44Updated 4 months ago
- ☆104Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆66Updated 2 years ago
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆12Updated 10 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 2 years ago
- Alignment-free structure prediction using protein language models☆22Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆167Updated last year