BioComputingUP / CAFA-evaluatorLinks
A Python Tool for Benchmarking Ontological Classification Methods
☆42Updated last year
Alternatives and similar repositories for CAFA-evaluator
Users that are interested in CAFA-evaluator are comparing it to the libraries listed below
Sorting:
- DeepGO with Fuzzy DL☆31Updated 2 years ago
- Protein language model trained on coding DNA☆47Updated 9 months ago
- Biological prediction models made simple.☆44Updated 3 weeks ago
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆41Updated last year
- RiboNucleic Acid (RNA) Language Model☆117Updated 2 months ago
- ☆68Updated 10 months ago
- Repository for mRNA Paper and CodonBERT publication.☆133Updated last year
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆88Updated last week
- ☆36Updated 6 months ago
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆21Updated 11 months ago
- ☆107Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆78Updated last year
- ☆44Updated 10 months ago
- Efficient implementatin of ESM family.☆59Updated 6 months ago
- Neural Networks for Protein Sequence Alignment☆124Updated 8 months ago
- Public repository describing training and testing of AntiBERTa.☆60Updated 2 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated last year
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆68Updated 6 months ago
- ☆21Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆116Updated 4 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆102Updated 10 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆64Updated last year
- Evolutionary velocity with protein language models☆93Updated last year
- ☆112Updated last year
- ☆111Updated 3 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆102Updated 4 years ago
- RNA Multiple Sequence Alignment☆43Updated 2 years ago
- ProCyon: A multimodal foundation model for protein phenotypes☆39Updated 5 months ago
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆153Updated last year
- ☆70Updated 10 months ago