BioComputingUP / CAFA-evaluatorLinks
A Python Tool for Benchmarking Ontological Classification Methods
☆50Updated 2 weeks ago
Alternatives and similar repositories for CAFA-evaluator
Users that are interested in CAFA-evaluator are comparing it to the libraries listed below
Sorting:
- DeepGO with Fuzzy DL☆31Updated 3 years ago
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆45Updated last year
- Protein language model trained on coding DNA☆53Updated last year
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆74Updated 2 years ago
- Neural Networks for Protein Sequence Alignment☆135Updated last year
- Compressing protein structures effectively with torsion angles☆186Updated last month
- ☆76Updated last year
- RiboNucleic Acid (RNA) Language Model☆154Updated 4 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆174Updated this week
- ☆109Updated 2 years ago
- Biological prediction models made simple.☆48Updated 3 weeks ago
- ☆79Updated last year
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆154Updated 2 years ago
- Bilingual Language Model for Protein Sequence and Structure☆297Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆127Updated 2 months ago
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆55Updated 3 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆91Updated last year
- ☆122Updated last year
- Multi-task and masked language model-based protein sequence embedding models.☆105Updated 4 years ago
- Efficient implementatin of ESM family.☆80Updated 4 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Updated 5 years ago
- Efficient evolution from protein language models☆220Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆76Updated 5 years ago
- ☆36Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆110Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆143Updated last year
- Evolutionary velocity with protein language models☆95Updated last month
- ☆54Updated last year
- ☆255Updated last year
- Deep functional residue identification☆346Updated 2 years ago