Alternatives and similar repositories for Stochastic-assembly-of-river-microeukaryotes

Users that are interested in Stochastic-assembly-of-river-microeukaryotes are comparing it to the libraries listed below

• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆140Updated last month
• yedeng-lab / iNAP
  Integrated Network Analysis Pipeline
  ☆18Updated last year
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆180Updated 2 months ago
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆72Updated 2 years ago
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆91Updated 3 months ago
• Mengting-Maggie-Yuan / warming-network-complexity-stability
  Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
  ☆50Updated 4 years ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆177Updated last week
• taowenmicro / phyloseq_translate
  phyloseq R
  ☆12Updated 6 years ago
• emblab-westlake / MbioAssy
  ☆17Updated 6 months ago
• qichao1984 / NCyc
  ☆53Updated 5 years ago
• YongxinLiu / Zhang2018SCLS
  Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)
  ☆31Updated 6 years ago
• xuechunxu / DiTing
  DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
  ☆50Updated last year
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆100Updated 4 years ago
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆30Updated 7 years ago
• SegataLab / export2graphlan
  Conversion software tool for producing both annotation and tree files for GraPhlAn
  ☆11Updated 3 years ago
• mgoeker / table2itol
  Generating iToL annotations from Spreadsheet or CSV files
  ☆107Updated 5 years ago
• YongxinLiu / EasyMicrobiome
  ☆145Updated 3 weeks ago
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆125Updated last year
• cozygene / FEAST
  Fast expectation maximization for microbial source tracking
  ☆136Updated last year
• xinehc / args_oap
  ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…
  ☆70Updated 10 months ago
• YongxinLiu / Amplicon2017
  Data and scripts for amplicon pipeline
  ☆27Updated 6 years ago
• taowenmicro / EasyStat
  EasyStat
  ☆20Updated 5 months ago
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆46Updated 4 years ago
• SegataLab / lefse
  ☆87Updated last year
• taowenmicro / EasyMultiOmics
  EasyMultiOmics: An R package for comprehensive multi-omics data mining in systematic microbiome research
  ☆99Updated last month
• EMBL-PKU / BASALT
  Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…
  ☆127Updated this week
• YunyunGao374 / ProteinCell2023MicrobiomeReview
  MicrobiomeReview
  ☆11Updated 2 years ago
• anw-sh / silva-138_classifiers
  Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
  ☆17Updated last year
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆62Updated 4 years ago
• microbma / earthnetwork
  Microbial co-occurrence network inferred from Earth Microbiome Project
  ☆26Updated 5 years ago