broadinstitute / gatk-docs
Documentation archive for GATK tools and workflows
☆84Updated 5 years ago
Alternatives and similar repositories for gatk-docs:
Users that are interested in gatk-docs are comparing it to the libraries listed below
- Haplotype based scans for selection☆121Updated last month
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- A library for running k-mers based GWAS☆106Updated 4 months ago
- WisecondorX — An evolved WISECONDOR☆96Updated 5 months ago
- BAM Statistics, Feature Counting and Annotation☆147Updated 3 weeks ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆105Updated 3 weeks ago
- FEELnc : FlExible Extraction of LncRNA☆85Updated 6 months ago
- Whole Genome Simulator for Next-Generation Sequencing☆96Updated 3 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆137Updated 2 weeks ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- A tool for profiling long STRs from short reads☆95Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆140Updated 2 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆116Updated 4 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Workflows for germline short variant discovery with GATK4☆134Updated 3 years ago
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- GWAS Pipeline for H3Africa☆108Updated this week
- Next-Generation Sequencing(NGS) toolkits.☆45Updated 8 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆75Updated 6 months ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆87Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated 2 weeks ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆79Updated 3 weeks ago