CovertLab / vEcoliLinks
Whole cell model of E. coli implemented with Vivarium
☆22Updated this week
Alternatives and similar repositories for vEcoli
Users that are interested in vEcoli are comparing it to the libraries listed below
Sorting:
- Whole Cell Model of E. coli☆26Updated last week
- ☆24Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Release of the whole cell E. coli model.☆68Updated 7 months ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- The BiGG Models website server☆83Updated 5 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆61Updated 2 months ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆29Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 4 months ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆15Updated last week
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- Metabolic Engineering Workbench☆40Updated last year
- Computation of Microbial Ecosystems in Time and Space☆24Updated 3 weeks ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated 2 weeks ago
- A collection of M models downloaded from published studies☆16Updated 9 years ago
- Comprehensive Python client for the Uniprot REST API☆50Updated last month
- Toolbox for including enzyme constraints on a genome-scale model.☆76Updated 2 months ago
- A PCR primer tool for DNA assembly flows☆33Updated last year
- nucleic acid folding☆94Updated 11 months ago
- A 3-Dimensional View of Human Metabolism and Disease☆28Updated 7 years ago
- Repository of tutorials for The COBRA Toolbox☆22Updated 3 weeks ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆56Updated 4 months ago
- A python wrapper for the benchling api☆50Updated 4 years ago
- Absolute quantification package based on quantms.io☆14Updated 2 months ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆57Updated 9 years ago