CovertLab / vEcoliLinks
Whole cell model of E. coli implemented with Vivarium
☆24Updated this week
Alternatives and similar repositories for vEcoli
Users that are interested in vEcoli are comparing it to the libraries listed below
Sorting:
- Whole Cell Model of E. coli☆28Updated this week
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 3 months ago
- Codon usage tables in code-friendly format + Python bindings☆38Updated 3 months ago
- Release of the whole cell E. coli model.☆68Updated 8 months ago
- nucleic acid folding☆101Updated 2 weeks ago
- The BiGG Models website server☆83Updated 5 years ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆57Updated last month
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last month
- ☆25Updated 2 years ago
- Metabolic Engineering Workbench☆40Updated last year
- Create force-directed graphs of RNA secondary structures.☆105Updated 5 years ago
- Template-based RNA secondary structure visualization☆26Updated 9 months ago
- An RNA manipulation library.☆57Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- A route planner for DNA assembly☆35Updated 3 months ago
- Computation of Microbial Ecosystems in Time and Space☆25Updated 3 weeks ago
- A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs☆54Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- Enzyme-constrained genome-scale models in python☆28Updated last year
- A collection of M models downloaded from published studies☆16Updated 9 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆15Updated 2 weeks ago
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- ☆14Updated 6 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆30Updated 7 years ago
- A python wrapper for the benchling api☆50Updated 4 years ago
- Vector graphics cartoons from protein structure☆51Updated 3 years ago
- Find common blocks and differences between DNA sequences☆42Updated 4 months ago