CovertLab / vEcoliLinks
Whole cell model of E. coli implemented with Vivarium
☆29Updated this week
Alternatives and similar repositories for vEcoli
Users that are interested in vEcoli are comparing it to the libraries listed below
Sorting:
- Whole Cell Model of E. coli☆34Updated last week
- ☆26Updated 3 years ago
- Release of the whole cell E. coli model.☆74Updated last year
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆61Updated 2 weeks ago
- The BiGG Models website server☆88Updated 6 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- A route planner for DNA assembly☆36Updated 7 months ago
- Enzyme-constrained genome-scale models in python☆30Updated 2 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆64Updated 7 months ago
- Metabolic Engineering Workbench☆41Updated last year
- Repository of tutorials for The COBRA Toolbox☆23Updated last month
- ☆23Updated 5 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆33Updated 3 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Template-based RNA secondary structure visualization☆26Updated last year
- nucleic acid folding☆109Updated 4 months ago
- Computation of Microbial Ecosystems in Time and Space☆26Updated 3 weeks ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 6 years ago
- A high-fidelity E. coli RNA-seq compendium☆33Updated 4 years ago
- Codon usage tables in code-friendly format + Python bindings☆42Updated 8 months ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆15Updated this week
- A collection of M models downloaded from published studies☆17Updated 9 years ago
- Diverse Genomic Embedding Benchmark☆50Updated 4 months ago
- ☆15Updated 9 years ago
- D3.js based visualizations of cobrapy metabolic models☆50Updated 5 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- ☆14Updated 7 years ago
- An RNA manipulation library.☆56Updated last year
- Curation and analysis of metabolic models☆36Updated 2 years ago
- Find common blocks and differences between DNA sequences☆42Updated 2 months ago