Alternatives and similar repositories for vEcoli

Users that are interested in vEcoli are comparing it to the libraries listed below

• CovertLab / wcEcoli
  Whole Cell Model of E. coli
  ☆29Updated last week
• SBRG / MASSpy
  ☆25Updated 2 years ago
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆15Updated last month
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆71Updated 10 months ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆62Updated 5 months ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆58Updated this week
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆32Updated 4 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆30Updated 7 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 4 months ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆40Updated last year
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆104Updated 2 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• ebi-jdispatcher / webservice-clients
  A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs
  ☆54Updated last year
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆26Updated 2 months ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆27Updated this week
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆23Updated last week
• latendre / PythonCyc
  ☆22Updated 5 years ago
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆33Updated 2 years ago
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆34Updated last year
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 6 months ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• Edinburgh-Genome-Foundry / DnaWeaver
  A route planner for DNA assembly
  ☆36Updated 5 months ago
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆30Updated 2 years ago
• vpejaver / mutpred2
  Source code for MutPred2.0
  ☆14Updated 6 months ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆123Updated 3 months ago
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated 6 months ago