Alternatives and similar repositories for MDV

Users that are interested in MDV are comparing it to the libraries listed below

• fish-quant / rna2seg
  rna2seg
  ☆17Updated 6 months ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆59Updated 3 weeks ago
• scverse / spatialdata-io
  ☆82Updated this week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last month
• HiDiHlabs / ssam
  ☆27Updated last year
• scverse / spatialdata-plot
  Static plotting for spatialdata
  ☆71Updated this week
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆17Updated this week
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆40Updated last month
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 4 months ago
• angelolab / Nimbus-Inference
  ☆31Updated 2 weeks ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆73Updated last week
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆129Updated this week
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated last year
• ome-zarr-models / ome-zarr-book
  An introduction to OME-Zarr for big bioimaging data
  ☆22Updated this week
• bioFAM / mofaflex
  factor models for omics data
  ☆30Updated this week
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆43Updated 3 months ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆79Updated 4 months ago
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆102Updated last week
• afermg / cp_measure
  Morphological features from images and masks made easy.
  ☆38Updated last month
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆143Updated 2 weeks ago
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆22Updated 7 months ago
• Hatchin / FlowSOM
  FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data
  ☆33Updated 3 years ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆104Updated 5 months ago
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆57Updated this week
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆20Updated last month
• nolanlab / REDSEA
  ☆18Updated last year
• EliHei2 / segger_dev
  a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…
  ☆80Updated 3 weeks ago
• schienstockd / cecelia
  Framework for image and flow cytometry analysis
  ☆32Updated 2 months ago
• KerenLab / CellSighter
  ☆35Updated last year
• scverse / spatialdata-notebooks
  ☆62Updated this week