Alternatives and similar repositories for SCAD

Users that are interested in SCAD are comparing it to the libraries listed below

• biomap-research / scFoundation
  ☆356Updated 7 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆88Updated 3 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆145Updated last year
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆62Updated 8 months ago
• TencentAILabHealthcare / scPROTEIN
  ☆53Updated 9 months ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆61Updated 9 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆71Updated 7 months ago
• TencentAILabHealthcare / scBERT
  ☆324Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆95Updated 6 months ago
• jkobject / geneformer
  ☆79Updated last month
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆94Updated last year
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• theislab / single-cell-transformer-papers
  ☆327Updated 4 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆84Updated 3 years ago
• jsxlei / scCLIP
  ☆30Updated last year
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆120Updated last week
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆105Updated 2 years ago
• bm2-lab / scPerturBench
  Single-cell perturbation effects prediction benchmark
  ☆22Updated 2 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆55Updated last year
• TencentAILabHealthcare / DNAGPT
  ☆43Updated 2 years ago
• Boom5426 / Awesome-Virtual-Cell
  Awesome-AI-Virtual-Cell
  ☆95Updated last week
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆330Updated this week
• yiqunchen / GenePT
  ☆285Updated last year
• Winnie09 / GPTCelltype
  ☆208Updated last year
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆73Updated 3 weeks ago
• microsoft / zero-shot-scfoundation
  ☆72Updated last year
• yhr91 / GEARS_misc
  ☆22Updated 11 months ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆218Updated 7 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆149Updated 7 months ago