Alternatives and similar repositories for SCAD

Users that are interested in SCAD are comparing it to the libraries listed below

• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆54Updated 11 months ago
• TencentAILabHealthcare / scPROTEIN
  ☆51Updated 6 months ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆58Updated last year
• xCompass-AI / GeneCompass
  GeneCompass
  ☆84Updated last week
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆81Updated 3 years ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆59Updated 5 months ago
• jkobject / geneformer
  ☆69Updated last month
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆142Updated last year
• myzhengSIMM / TranSiGen
  ☆30Updated 5 months ago
• jsxlei / scCLIP
  ☆29Updated last year
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆52Updated 6 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆70Updated 2 weeks ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆94Updated 3 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆66Updated 4 months ago
• microsoft / zero-shot-scfoundation
  ☆70Updated 10 months ago
• biomed-AI / CellFM
  ☆55Updated last month
• deeplearningplus / tGPT
  Generative Pretraining from Transcriptomes
  ☆15Updated 2 years ago
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆32Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆86Updated last year
• TencentAILabHealthcare / DNAGPT
  ☆40Updated last year
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆67Updated last year
• bm2-lab / UniTCR
  ☆10Updated last year
• theislab / CFGen
  ☆17Updated this week
• poseidonchan / TAPE
  Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
  ☆57Updated last year
• jimmylihui / GenBench
  ☆21Updated 3 weeks ago
• SmritiChawla / Precily
  ☆31Updated 2 years ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆128Updated 4 months ago
• QuKunLab / MultiomeBenchmarking
  ☆47Updated 3 months ago
• yhr91 / GEARS_misc
  ☆19Updated 8 months ago
• labomics / midas
  ☆56Updated 2 weeks ago