CellProfiler / centrosome

Related projects: ⓘ

• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆24Updated last month
• svi-opensource / libics
  Image Cytometry Standard file reading and writing.
  ☆16Updated last week
• ilastik / tiktorch
  Tiktorch
  ☆11Updated this week
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆34Updated last month
• Fafa87 / cellstar
  Algorithm for round cells identification in the brightfield microscopy images.
  ☆21Updated last year
• VolkerH / DaskFusion
  Fusing image tiles with dask array's map_blocks
  ☆29Updated 6 months ago
• InsightSoftwareConsortium / ITKMontage
  Montaging for microscopy imaging files
  ☆26Updated 2 weeks ago
• haesleinhuepf / napari-cupy-image-processing
  ☆20Updated last year
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆37Updated 2 months ago
• imjoy-team / imjoy-jupyter-extension
  Running ImJoy plugins in Jupyter notebooks
  ☆11Updated last year
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 2 years ago
• cgohlke / oiffile
  Read Olympus image files (OIF and OIB)
  ☆11Updated 3 months ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆34Updated 3 weeks ago
• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆53Updated 2 years ago
• ome / omero-ms-zarr
  Experimental micro-service for implementing the Zarr spec over HTTP
  ☆17Updated last month
• TheJacksonLaboratory / zarrdataset
  A dataset for loading zarr files to be used in machine learning training pipelines
  ☆21Updated 3 weeks ago
• yapic / yapic
  Yet Another Pixel Classifier (based on deep learning)
  ☆33Updated 2 months ago
• michaellee1 / CellSeg
  ☆20Updated last year
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆27Updated last week
• CellProfiler / stitching
  Image stitching
  ☆11Updated 5 years ago
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆26Updated 3 years ago
• mehta-lab / microDL
  3D virtual staining with 2D and 2.5D U-Nets
  ☆27Updated last year
• folterj / BioImageOperation
  Image processing tool focusing on biological applications
  ☆13Updated last week
• flevet / PoCA
  ☆19Updated 10 months ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆37Updated this week
• haesleinhuepf / the-segmentation-game
  Gamified image segmentation quality estimation
  ☆17Updated last year
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆19Updated 4 years ago
• BodenmillerGroup / xtiff
  A tiny Python library for writing multi-channel TIFF stacks.
  ☆27Updated 3 weeks ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆51Updated last year
• gioda / FeARLesS
  4D reconstruction of developmental trajectories using spherical harmonics
  ☆19Updated 9 months ago