Alternatives and similar repositories for MultiStar

Users that are interested in MultiStar are comparing it to the libraries listed below

• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆35Updated last year
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆33Updated last year
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆31Updated 3 months ago
• yanglf1121 / NuSeT
  NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells
  ☆20Updated 4 years ago
• ajinkya-kulkarni / PySpatialHistologyAnalysis
  Package using StarDist and Python that performs object detection and spatial analysis on H&E images
  ☆3Updated 6 months ago
• AstroPathJHU / AstroPathPipeline
  The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …
  ☆18Updated 3 weeks ago
• cellimnet / scellseg-publish
  A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.
  ☆10Updated last year
• michaellee1 / CellSeg
  ☆23Updated last year
• masih4 / NuInsSeg
  NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images
  ☆33Updated 10 months ago
• MarkZaidi / Universal-StarDist-for-QuPath
  Transfer trained StarDist models across imaging modalities
  ☆3Updated 7 months ago
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆27Updated 9 months ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆69Updated 10 months ago
• cpathology / NucleiSegHE
  H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net
  ☆9Updated 9 months ago
• kevindehaan / stain-transformation
  ☆40Updated 3 years ago
• Path-AI / hif2gene
  Data and code to accompany our Nature publication
  ☆46Updated 3 years ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆54Updated 2 years ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆39Updated last month
• trasse / OpSeF-IV
  ☆25Updated 4 years ago
• stanfordmlgroup / DLBCL-Morph
  DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …
  ☆36Updated 4 years ago
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆35Updated 3 months ago
• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆27Updated last week
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆24Updated last week
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆87Updated last month
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆18Updated last week
• markowetzlab / pathml
  A Python library for deep learning on whole-slide images
  ☆52Updated 3 years ago
• m4ln / stainTransfer_CycleGAN_pytorch
  Image-to-Image Translation in PyTorch
  ☆23Updated last year
• serrob23 / falsecolor
  FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…
  ☆30Updated 4 years ago
• maweigert / neubias_academy_stardist
  ☆31Updated 4 years ago