overlapping-instances / MultiStar

Related projects ⓘ

Alternatives and complementary repositories for MultiStar

• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆29Updated last year
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆27Updated 3 months ago
• yanglf1121 / NuSeT
  NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells
  ☆19Updated 4 years ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆33Updated 10 months ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆31Updated last year
• AstroPathJHU / AstroPathPipeline
  The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …
  ☆18Updated last year
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆59Updated 3 months ago
• Path-AI / hif2gene
  Data and code to accompany our Nature publication
  ☆43Updated 2 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆52Updated 4 months ago
• kevindehaan / stain-transformation
  ☆40Updated 2 years ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆14Updated 4 months ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆45Updated 2 years ago
• markowetzlab / pathml
  A Python library for deep learning on whole-slide images
  ☆50Updated 3 years ago
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆29Updated 3 years ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆34Updated this week
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆51Updated 3 months ago
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆22Updated 2 months ago
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆74Updated this week
• AdalbertoCq / Histomorphological-Phenotype-Learning
  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…
  ☆47Updated 3 months ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆51Updated 2 years ago
• stanfordmlgroup / DLBCL-Morph
  DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …
  ☆36Updated 3 years ago
• AllenCell / aics-ml-segmentation
  ☆30Updated 2 years ago
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆46Updated last month
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆22Updated 2 months ago
• huangzhii / IMPRESS
  ☆12Updated last year
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆30Updated last month
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆18Updated 7 months ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆76Updated 8 months ago