CellCognition / cecogLinks
A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
☆45Updated last year
Alternatives and similar repositories for cecog
Users that are interested in cecog are comparing it to the libraries listed below
Sorting:
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- Easily read and write ome-tiff images in python☆28Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- PSFj - Know your microscope fluorescence☆23Updated 5 years ago
- ☆51Updated 7 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated last month
- TensorFlow Deconvolution for Microscopy Data☆91Updated 3 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆30Updated 8 months ago
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- Tool for segmentation in bioimaging☆35Updated last week
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 6 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 4 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- Lazily load multiscale whole-slide images with openslide and dask☆34Updated 3 years ago
- Community-contributed and experimental CellProfiler modules.☆72Updated last week
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Updated 8 months ago
- Curated metadata for all studies published in the Image Data Resource☆16Updated 4 months ago
- Core functionality of NanoJ☆17Updated last year
- Python module for registering and fusing multi-view microscopy data☆24Updated 9 months ago
- Smooth 2D manifold extraction from 3D image stack☆21Updated 7 years ago
- Yet Another Pixel Classifier (based on deep learning)☆36Updated last year
- An Ilastik-like interactive pixel classifier.☆16Updated last year
- ☆24Updated 5 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated 3 weeks ago
- ☆23Updated 4 years ago
- ilastik-shell, applets, and workflows to string them together.☆385Updated last week
- A library to facilitate machine learning on multi-dimensional images.☆87Updated last week