CellCognition / cecog
A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
☆43Updated 10 months ago
Alternatives and similar repositories for cecog
Users that are interested in cecog are comparing it to the libraries listed below
Sorting:
- ☆49Updated 6 years ago
- Legacy project superseded by https://github.com/morphonets/SNT☆11Updated 3 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- ☆40Updated 5 years ago
- Automatic segmentation of electron microscopy volumes☆77Updated 4 years ago
- 3D virtual staining with 2D and 2.5D U-Nets☆29Updated last year
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- A general illumination correction method for optical microscopy.☆41Updated 3 years ago
- ☆46Updated 6 years ago
- Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar☆12Updated last year
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Python nd2 reader based on the ND2 SDK☆17Updated 3 years ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Microscopy Image Cytometry Toolkit☆116Updated 2 years ago
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆60Updated 4 years ago
- ☆20Updated 3 months ago
- Integrated Cell project implemented in pytorch☆44Updated last year
- Tiktorch☆12Updated last month
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 8 months ago
- Smooth 2D manifold extraction from 3D image stack☆21Updated 7 years ago
- Python tools for ImageJ☆13Updated 3 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆53Updated 4 years ago
- SCIFIO ImageIO plugin for ITK☆16Updated last month
- ImageJ-specific applications of the SciJava script languages☆27Updated 6 months ago
- ☆18Updated 2 years ago
- Image Cytometry Standard file reading and writing.☆18Updated 8 months ago
- A fully scalable robust image feature extraction library.☆24Updated this week
- A library to facilitate machine learning on multi-dimensional images.☆82Updated last week