A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
☆45Jun 18, 2024Updated last year
Alternatives and similar repositories for cecog
Users that are interested in cecog are comparing it to the libraries listed below
Sorting:
- OME model (specification, code generator, implementation)☆16Jan 22, 2026Updated last month
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated 3 weeks ago
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- ☆13Apr 27, 2020Updated 5 years ago
- PyFRAP: A Python based FRAP analysis tool box☆17Feb 1, 2026Updated last month
- ☆15Jul 29, 2022Updated 3 years ago
- An Ilastik-like interactive pixel classifier.☆16Sep 5, 2024Updated last year
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- A repository for data package representation for cell tracking data☆13Apr 30, 2020Updated 5 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 10 months ago
- Jupyter Notebooks for the Image Data Resource☆19Feb 20, 2026Updated last week
- A simple and easy-to-use Python wrapper for libCZI - a cross-platform C++ library intended for providing read and write access to CZI doc…☆27Dec 15, 2025Updated 2 months ago
- FLIMLib: a package for exponential curve fitting of fluorescence lifetime image data☆29Oct 3, 2025Updated 4 months ago
- Course and exercises on deep learning for microscopy image analysis☆22Nov 25, 2025Updated 3 months ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated 9 months ago
- KNIME Image Processing Extension☆50Nov 25, 2025Updated 3 months ago
- Python nd2 reader based on the ND2 SDK☆17Jan 28, 2022Updated 4 years ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Dec 16, 2024Updated last year
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- Open Delmic Microscope Software☆51Updated this week
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆46Feb 18, 2025Updated last year
- ☆18Nov 25, 2025Updated 3 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Feb 4, 2025Updated last year
- CytoData 2016 – origin story☆18Sep 15, 2017Updated 8 years ago
- De novo analysis for cryo-electron tomography☆25Nov 8, 2024Updated last year
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆93Mar 5, 2024Updated last year
- Smooth 2D manifold extraction from 3D image stack☆22Mar 18, 2018Updated 7 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- Read ROI files .zip or .roi generated with ImageJ.☆53Jun 1, 2022Updated 3 years ago
- Methods for Image-Based Cell Profiling☆51May 8, 2024Updated last year
- ImageJ-specific applications of the SciJava script languages☆27Oct 22, 2025Updated 4 months ago
- ☆24Aug 27, 2020Updated 5 years ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Jun 3, 2022Updated 3 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Dec 3, 2021Updated 4 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Jun 18, 2020Updated 5 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆60Jul 18, 2025Updated 7 months ago
- Image classification for imaging flow cytometry.☆28Jan 3, 2025Updated last year
- Friendly base POM for all SciJava-based software☆28Jan 15, 2026Updated last month
- A high content analysis method to study skeletal muscle☆12Apr 26, 2024Updated last year