De novo analysis for cryo-electron tomography
☆26Nov 8, 2024Updated last year
Alternatives and similar repositories for pyseg_system
Users that are interested in pyseg_system are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cryo-EM tomogram simulator☆33Aug 3, 2026Updated last week
- PIP package of cryoCARE☆46Apr 2, 2024Updated 2 years ago
- segmentation of spherical vesicles in cryo-electron tomography☆12Oct 25, 2024Updated last year
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆42Jan 30, 2024Updated 2 years ago
- Complementary tools for Relion tomo☆12Mar 9, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SerialEM mdoc files as pandas dataframes☆14Feb 4, 2026Updated 6 months ago
- ☆13May 22, 2025Updated last year
- A CNN for denoising cryo-EM images☆14Dec 9, 2019Updated 6 years ago
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 5 years ago
- ☆12Apr 4, 2023Updated 3 years ago
- ☆11Mar 23, 2023Updated 3 years ago
- Contextual Analysis Tools for cryoET and subtomogram averaging☆41Aug 6, 2026Updated last week
- ☆41Sep 4, 2025Updated 11 months ago
- ☆18Oct 21, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆19Dec 22, 2025Updated 7 months ago
- GPU-accelerated template matching for cryo-ET☆65Aug 5, 2026Updated last week
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated 2 years ago
- 3D-CTF correction for cryo-electron tomography☆31Nov 8, 2018Updated 7 years ago
- ☆38Aug 7, 2024Updated 2 years ago
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆33Jul 13, 2026Updated last month
- Live processing and real time reconstruction of cryo☆59Updated this week
- ☆82Aug 4, 2026Updated last week
- ☆57Aug 19, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.☆46Jun 16, 2026Updated last month
- PyTom software for cryo-tomogram processing☆46Jan 5, 2026Updated 7 months ago
- A Matlab script for deconvolving the CTF in single micrographs/tomograms with a Wiener-like filter☆12Jun 26, 2019Updated 7 years ago
- Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms☆56Jul 29, 2025Updated last year
- Jupyter-based tool for membrane segmentation manipulation☆10Jul 9, 2025Updated last year
- AI for tomography☆158Jul 1, 2026Updated last month
- Scripts for aligning cryo-electron microscopy direct electron detector movies on whole movies or individual particle trajectories☆12Mar 28, 2017Updated 9 years ago
- cryo-ET particle picking by representation and metric learning☆46Nov 24, 2025Updated 8 months ago
- A somewhat cleaned-up version of the TOM toolbox for electron tomography☆16Nov 26, 2016Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.☆18Mar 4, 2023Updated 3 years ago
- ☆37Jun 22, 2023Updated 3 years ago
- Rapid Cryo-ET Reconstruction via Transform-Localized Deep Learning☆21Updated this week
- cryo_fit1 source codes, test files, live at .../phenix-xxxx/modules☆10Mar 25, 2022Updated 4 years ago
- Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.☆35Updated this week
- membrane segmentation in 3D for cryo-ET☆94Jul 20, 2026Updated 3 weeks ago
- Reliable estimation of membrane curvature for cryo-electron tomography☆22Jun 19, 2026Updated last month