Alternatives and similar repositories for pyseg_system

Users that are interested in pyseg_system are comparing it to the libraries listed below

• carsonpurnell / cryotomosim_CTS
  cryo-EM tomogram simulator
  ☆29Updated this week
• juglab / cryoCARE_pip
  PIP package of cryoCARE
  ☆45Updated last year
• ZauggGroup / DeePiCt
  Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…
  ☆39Updated 2 years ago
• alisterburt / autoalign_dynamo
  automated on-the-fly tilt-series alignment
  ☆11Updated 4 years ago
• bpowell122 / tomodrgn
  Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms
  ☆31Updated 6 months ago
• KosinskiLab / colabseg
  Jupyter-based tool for membrane segmentation manipulation
  ☆10Updated 7 months ago
• CellArchLab / MemBrain
  ☆36Updated 2 years ago
• builab / subtomo2Chimera
  ☆19Updated last month
• czimaginginstitute / AreTomo2
  ☆52Updated last year
• teamtomo / mdocfile
  SerialEM mdoc files as pandas dataframes
  ☆14Updated last week
• KudryashevLab / TomoBEAR
  TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…
  ☆29Updated 7 months ago
• SBC-Utrecht / PyTom
  PyTom software for cryo-tomogram processing
  ☆44Updated last month
• MPI-Dortmund / tomotwin-cryoet
  cryo-ET particle picking by representation and metric learning
  ☆41Updated 2 months ago
• bionanopatterning / Ais
  ☆25Updated last month
• thomasfrosio / emClarity-tutorial
  ☆12Updated 2 years ago
• logicvay2010 / TomoNet
  TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing
  ☆21Updated last week
• MPI-Dortmund / cryolo
  cryolo documentation
  ☆11Updated last year
• rsanchezloayza / SUSAN
  ☆10Updated last month
• teamtomo / imodmodel
  IMOD model files as pandas dataframes in Python
  ☆11Updated 7 months ago
• teamtomo / starfile
  STAR file I/O in Python
  ☆52Updated 2 months ago
• turonova / cryoCAT
  Contextual Analysis Tools for cryoET and subtomogram averaging
  ☆33Updated last week
• turonova / novaCTF
  3D-CTF correction for cryo-electron tomography
  ☆28Updated 7 years ago
• SBC-Utrecht / pytom-match-pick
  GPU-accelerated template matching for cryo-ET
  ☆49Updated last month
• joton / reliontomotools
  Complementary tools for Relion tomo
  ☆11Updated last year
• frosinastojanovska / cryosiam
  Self-supervised deep learning framework for CryoET analysis
  ☆20Updated 2 weeks ago
• anmartinezs / polnet
  Generates synthetic datasets for Cryo-Electron Tomography
  ☆32Updated 6 months ago
• czimaginginstitute / MotionCor3
  Anisotropic correction of beam induced sample motion for cryo-electron microscopy and tomography
  ☆58Updated 4 months ago
• warpem / warp
  ☆64Updated this week
• dtegunov / tom
  A somewhat cleaned-up version of the TOM toolbox for electron tomography
  ☆16Updated 9 years ago
• eisfabian / PACEtomo
  Parallel cryo electron tomography via beam image shift
  ☆40Updated 2 months ago