imagej / imagej-scripting
ImageJ-specific applications of the SciJava script languages
☆25Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for imagej-scripting
- CLIJ is deprecated. Visit CLIJ2☆56Updated 3 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 3 months ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆25Updated 2 months ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆24Updated 2 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆60Updated 2 weeks ago
- ☆21Updated 3 years ago
- Simple Maven project for an ImageJ2 command☆30Updated 2 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆23Updated 4 years ago
- GPU accelerated beam propagation tools for biological light tissue simulations☆35Updated 6 years ago
- Zernike Optimized Localization Algorithm for 3D single molecule localizations☆14Updated 2 years ago
- PSFj - Know your microscope fluorescence☆20Updated 4 years ago
- Python bindings for MMCore, Micro-Manager's device control layer☆33Updated last month
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆16Updated 7 years ago
- Online documentation and reference for CLIJ☆28Updated 3 years ago
- Things we use regularly☆29Updated 2 months ago
- Various parts made for fluorescence microscopy + optics work☆16Updated 5 years ago
- AutoPilot library☆14Updated 8 years ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated 5 months ago
- ☆20Updated last month
- Core functionality of NanoJ☆15Updated 7 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆37Updated 3 weeks ago
- ImgLib2/BDV implementation of Stitching for large datasets☆68Updated 2 weeks ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆38Updated 3 weeks ago
- Detection of Molecules plugin for ImageJ, Utrecht University☆14Updated 2 years ago
- Create 3D/4D animations using a natural language-based syntax☆58Updated last year
- Generate markdown notebooks from ImageJ Macro☆23Updated 3 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆37Updated this week
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆13Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆57Updated this week