tension inference for epithelial cells
☆20Nov 6, 2023Updated 2 years ago
Alternatives and similar repositories for TensionMap
Users that are interested in TensionMap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 3D segmentation for cells and organoids of 3D multichannel images☆34Jun 23, 2026Updated 4 months ago
- ☆10Jun 18, 2025Updated last year
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆20May 26, 2025Updated last year
- ☆12May 26, 2026Updated 5 months ago
- Documentation☆20Aug 28, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues☆16Oct 17, 2026Updated last week
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆26Mar 16, 2025Updated last year
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 6 years ago
- Neighborhood Non-Negative Matrix Factorization☆11Sep 24, 2026Updated last month
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated last year
- Extract surfaces from 3D microscopy images and project them to 2D for analysis and visualization☆12Jul 17, 2026Updated 3 months ago
- Scalable processing for image-based cell profiling☆12Dec 2, 2025Updated 10 months ago
- Benchmarking pipeline for single-cell perturbation prediction tools☆38Jul 11, 2025Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Learning meaningful representations of genes☆22Jul 7, 2025Updated last year
- ☆14Jun 1, 2026Updated 4 months ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆26May 3, 2023Updated 3 years ago
- ☆18Aug 14, 2026Updated 2 months ago
- ☆14Dec 18, 2024Updated last year
- ☆12May 24, 2024Updated 2 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆30Aug 20, 2024Updated 2 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆12Dec 13, 2024Updated last year
- Python package for Single-Cell Euclidean Network Embedding (SCENE): interpretable joint embeddings of cells and genes from single-cell RN…☆20Sep 21, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which est…☆19Jun 23, 2025Updated last year
- Illico is a python library performing fast and lightweight CPU-based wilcoxon rank-sum tests for single-cell RNASeq.☆22Oct 1, 2026Updated 3 weeks ago
- This is the repository for SeCNV, a single cell copy number profiling tool.☆12Dec 12, 2024Updated last year
- A unified framework for identifying multicellular niches and niche-regulated cell states from spatial transcriptomics data.☆16Aug 3, 2026Updated 2 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated 2 years ago
- ☆11Aug 21, 2024Updated 2 years ago
- Cell tracker designed for tracking intestinal organoids☆44Oct 15, 2026Updated 2 weeks ago
- A toolkit for processing multiplexed tissue images☆70Oct 19, 2026Updated last week
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆18Dec 7, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆34Feb 25, 2025Updated last year
- ☆36Jun 15, 2026Updated 4 months ago
- Beginner-friendly introduction to single-cell RNA-seq analysis using Scanpy, designed for lab onboarding.☆14Apr 15, 2026Updated 6 months ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- INDRA Context Graph Extension☆16Sep 29, 2026Updated last month
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Jan 20, 2022Updated 4 years ago
- MaxToki: an autoregressive single-cell language model built on BioNeMo/NeMo/Megatron.☆29Jul 28, 2026Updated 3 months ago