BWT-SW - A Practical Local Alignment Tool that Finds All Alignments
☆12Feb 4, 2011Updated 15 years ago
Alternatives and similar repositories for bwt-sw
Users that are interested in bwt-sw are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- miscellaneous script-like stuff in go for bioinformatics☆14Nov 4, 2016Updated 10 years ago
- Benchmark of four minimal perfect hash libraries (phf, emphf, CMPH, Sux4J)☆14Apr 6, 2017Updated 9 years ago
- Genome assembly by maximum likelihood☆11Oct 3, 2017Updated 9 years ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Apr 6, 2016Updated 10 years ago
- Burrows-Wheeler-Scott transform☆13Jun 7, 2013Updated 13 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 9 years ago
- The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.☆18Feb 26, 2022Updated 4 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- A list of weak Bacterial assemblies in GenBank☆18Aug 3, 2017Updated 9 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Sep 3, 2026Updated 2 months ago
- 📦 Go library that enables your users to submit error reports to GitHub☆12May 6, 2026Updated 6 months ago
- Similar genome assisted reassembly pipeline for PacBio long reads☆11Dec 7, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a multi-node fabric-attached memory manager that provides simple abstractions for accessing and allocating NVM from fabric-attached memor…☆12Jun 3, 2024Updated 2 years ago
- FM-index representation of a de Bruijn graph☆27Aug 7, 2017Updated 9 years ago
- Lock-free (Non-blocking) Data Structures in Java☆13Dec 30, 2015Updated 10 years ago
- lua debug tool like gdb for c/c++☆10Aug 30, 2018Updated 8 years ago
- Go Version of Redis on PMEM☆12Dec 20, 2021Updated 4 years ago
- This is an old archived repository that we keep for our records. Please use recent GENESIS repository and do not use this one.☆11Sep 15, 2022Updated 4 years ago
- Model summary of keras pre-trained neural networks.☆12Aug 1, 2019Updated 7 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- ☆11Aug 5, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Parallel implementation of Smith–Waterman using OpenMP☆10Oct 28, 2020Updated 6 years ago
- ☆15Mar 24, 2023Updated 3 years ago
- A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data☆14Oct 12, 2023Updated 3 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Feb 24, 2017Updated 9 years ago
- Isaac Genome Alignment Software☆36Apr 7, 2015Updated 11 years ago
- The Librarian suite for The Machine from Hewlett Packard Enterprise is the distributed file system that provides access to Fabric-Attache…☆18Jun 7, 2019Updated 7 years ago
- Population-scale detection of novel sequence insertions☆28Aug 16, 2022Updated 4 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 5 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆26Apr 2, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Benchmark data structures for kmer sets.☆13Aug 29, 2026Updated 2 months ago
- Compute hash digests for DNA sequences in a FASTA file☆13May 31, 2026Updated 5 months ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- smith-waterman-gotoh alignment algorithm☆18Sep 1, 2017Updated 9 years ago
- ☆10Sep 28, 2026Updated last month
- Streaming fragment assignment and quantification for high-throughput sequencing.☆38Nov 14, 2019Updated 6 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago