Estimating k-mer coverage histogram of genomics data
☆78Mar 13, 2026Updated 3 weeks ago
Alternatives and similar repositories for ntCard
Users that are interested in ntCard are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast hash function for DNA/RNA sequences☆106Apr 2, 2026Updated last week
- Create Bloom filters for a given reference and then use it to categorize sequences☆77Nov 26, 2024Updated last year
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 8 years ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- An efficient index for the colored, compacted, de Bruijn graph☆111Mar 11, 2026Updated 3 weeks ago
- Deep learning embedding for nucleotide sequences☆20Mar 12, 2026Updated 3 weeks ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Jan 25, 2024Updated 2 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Components of genome sequence assembly tools☆21Mar 30, 2022Updated 4 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆86Mar 7, 2024Updated 2 years ago
- compacted de Bruijn graph construction in low memory☆100Nov 4, 2025Updated 5 months ago
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated last year
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- reference-free transcriptome assembly for short and long reads☆108Mar 13, 2026Updated 3 weeks ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated 2 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18May 21, 2017Updated 8 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Nov 13, 2025Updated 4 months ago
- A SIMD-accelerated library to compute random minimizers☆39Mar 1, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆73Mar 1, 2019Updated 7 years ago
- A genomic minhashing implementation in Rust☆103Jun 17, 2025Updated 9 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated last month
- Histosketching Using Little Kmers☆57May 25, 2023Updated 2 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 4 months ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- ☆13Dec 26, 2025Updated 3 months ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆223Oct 23, 2025Updated 5 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Go implementation of ntHash☆20Sep 16, 2021Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆56Jul 6, 2025Updated 9 months ago
- de Bruijn Workflow using Integral information of Short pair End reads☆13Aug 21, 2024Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Construct a Physical Map from Linked Reads☆18Apr 1, 2026Updated last week
- De Bruijn graph representation in low memory☆35Jul 6, 2024Updated last year
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Apr 30, 2021Updated 4 years ago