Alternatives and similar repositories for valr

Users that are interested in valr are comparing it to the libraries listed below

• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆38Updated 3 months ago
• const-ae / tidygenomics
  Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/
  ☆104Updated 3 weeks ago
• federicomarini / pcaExplorer
  pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
  ☆56Updated last month
• js229 / Vennerable
  Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries.…
  ☆91Updated 5 years ago
• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆54Updated 10 months ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆77Updated 2 years ago
• gladkia / igvShiny
  An htmlwidget version of igv, for RStudio and Shiny apps
  ☆38Updated 5 months ago
• tidyomics / plyranges
  A grammar of genomic data transformation
  ☆152Updated 2 months ago
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆46Updated 2 months ago
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆115Updated 4 months ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆73Updated 2 months ago
• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆45Updated last month
• tpq / propr
  [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
  ☆77Updated this week
• tgirke / systemPipeR
  Project Website:
  ☆54Updated last week
• lvulliard / BioCircos.R
  Htmlwidgets binding R commands to the BioCircos.js library
  ☆39Updated 6 years ago
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 5 years ago
• waldronlab / ProjectAsPackage
  Demonstration of the use of an R package to organize a data analysis project
  ☆22Updated 5 years ago
• tidyomics / tidySummarizedExperiment
  Brings SummarizedExperiment to the tidyverse
  ☆29Updated last month
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆93Updated last year
• XiaoLuo-boy / ggheatmap
  ggplot2 version of heatmap
  ☆90Updated 2 years ago
• ChrisLou-bioinfo / gg.gap
  Easy to define segments in y-axis for 'ggplot2'.
  ☆27Updated 6 years ago
• variani / lme4qtl
  Mixed models @lme4 + custom covariances + parameter constraints
  ☆53Updated 5 years ago
• YuLab-SMU / aplot
  Decorate a plot with associated information
  ☆126Updated 4 months ago
• ropensci / tidyqpcr
  quantitative PCR analysis in the tidyverse
  ☆56Updated last year
• Bioconductor / BiocParallel
  Bioconductor facilities for parallel evaluation
  ☆69Updated 3 months ago
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆81Updated 2 weeks ago
• nickjer / singularity-rstudio
  RStudio Server in a Singularity container
  ☆56Updated last year
• Bioconductor / bioconductor_full
  [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages
  ☆25Updated 2 years ago
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆14Updated last year