☆38Sep 2, 2026Updated this week
Alternatives and similar repositories for spatialdataR
Users that are interested in spatialdataR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Aug 31, 2026Updated last week
- Python API and Jupyter widget for Vitessce☆67Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 9 months ago
- Interactive visualization of spatial omics data☆89Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A simple and performant native R reader & writer for Zarr Arrays☆54Aug 21, 2026Updated 2 weeks ago
- Single-cell differential expression☆19Apr 23, 2026Updated 4 months ago
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 5 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Updated this week
- ☆67Aug 18, 2026Updated 2 weeks ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated 11 months ago
- Automatically annotate cell types, consistently across samples.☆27Aug 31, 2026Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆81Aug 22, 2026Updated 2 weeks ago
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated last month
- An open and interoperable data framework for spatial omics data☆389Updated this week
- Fast array utilities☆15Updated this week
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 6 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 24, 2026Updated 2 weeks ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Updated this week
- Static plotting for spatialdata☆86Updated this week
- ITK IO for images stored in OME-Zarr format.☆10Sep 4, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Registries for biological ontologies.☆27Aug 3, 2026Updated last month
- The omnibenchmark CLI☆18Updated this week
- ☆31Aug 7, 2026Updated last month
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 9 months ago
- CAST package☆43Oct 26, 2024Updated last year
- Block-wise operations for large nD volumes☆45Updated this week
- Spatial Single-Cell Analysis Toolkit☆115Updated this week
- ☆74May 28, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 3 years ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated last year
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆171Updated this week
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆26Updated this week
- Performance benchmarks of Zarr V3 implementations☆22Feb 8, 2026Updated 7 months ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 11 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year