BaselAbujamous / clust
Automatic and optimised consensus clustering of one or more heterogeneous datasets
☆166Updated 2 years ago
Alternatives and similar repositories for clust:
Users that are interested in clust are comparing it to the libraries listed below
- Detecting sites of genomic enrichment☆189Updated last year
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆272Updated 9 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆207Updated last month
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆244Updated last month
- ☆147Updated 2 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆140Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆162Updated 3 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆212Updated 9 months ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆307Updated last year
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- A SingleCell RNASeq pre-processing snakemake workflow☆147Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated last year
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆209Updated 2 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆145Updated 6 months ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆239Updated 3 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆106Updated 4 years ago
- Application for making ENCODE Blacklists☆295Updated 3 years ago
- Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files☆106Updated 3 years ago
- Ultrafast GPU-enabled QTL mapper☆174Updated 2 weeks ago
- Generate IGV style locus tracks from bigWig files in R☆155Updated 4 months ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆220Updated 2 weeks ago
- Transcript quantification import for modular pipelines☆137Updated last year
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆212Updated this week
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 3 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆115Updated last year
- Command-line tool for the visualization of splicing events across multiple samples☆128Updated 8 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆101Updated 4 months ago