Automatic and optimised consensus clustering of one or more heterogeneous datasets
☆170Oct 31, 2022Updated 4 years ago
Alternatives and similar repositories for clust
Users that are interested in clust are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆84Feb 29, 2024Updated 2 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 5 months ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆95Apr 30, 2021Updated 5 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆25Apr 21, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- A versatile and efficient RNA-Seq read counting tool☆16Mar 30, 2016Updated 10 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- Interval data structure☆235Mar 18, 2026Updated 7 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Aug 18, 2025Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- Phylogenetic orthology inference for comparative genomics☆877Jul 15, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 3 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆202Jan 30, 2026Updated 9 months ago
- GFF and GTF file manipulation and interconversion☆321Oct 21, 2026Updated last week
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Sep 28, 2022Updated 4 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,454Oct 7, 2026Updated 3 weeks ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37May 18, 2022Updated 4 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 5 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 11 months ago
- Splice junction analysis and filtering from BAM files☆44Mar 31, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆151Oct 28, 2023Updated 3 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆78Nov 26, 2024Updated last year
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆60Sep 5, 2017Updated 9 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 10 years ago
- Code for finding putative enhancers using Hi-C data☆28Feb 27, 2018Updated 8 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26May 21, 2018Updated 8 years ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆942Updated this week
- ORF Quantification pipeline for Alternative Splicing☆17May 11, 2021Updated 5 years ago
- HMMRATAC peak caller for ATAC-seq data☆101Nov 12, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 6 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆907Oct 3, 2026Updated 3 weeks ago
- A software suite for Probe Design and Proximity Detection for targeted chromosome conformation capture applications☆14Oct 5, 2026Updated 3 weeks ago
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 3 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- A Modern Perl Framework for High Throughput Sequencing analysis☆17May 6, 2020Updated 6 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆74Dec 4, 2024Updated last year