haddocking / arctic3dLinks
Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
☆32Updated 2 weeks ago
Alternatives and similar repositories for arctic3d
Users that are interested in arctic3d are comparing it to the libraries listed below
Sorting:
- Modelling protein conformational landscape with Alphafold☆54Updated 2 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆59Updated last month
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- Fast and accurate molecular docking with an AI pose scoring function☆42Updated last year
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 5 months ago
- Structure prediction and design of proteins with noncanonical amino acids☆110Updated 2 weeks ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 5 months ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆29Updated 2 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated last month
- Python package for the analysis of natural and modified peptides using a set of modules to study their sequences☆40Updated last week
- Structure prediction of alternative protein conformations☆80Updated 8 months ago
- A Unified Approach to Protein Engineering☆42Updated last year
- Scores for Hydrophobicity and Charges based on SASAs☆39Updated 5 months ago
- mdml: Deep Learning for Molecular Simulations☆47Updated 6 months ago
- Code for ApoDock☆21Updated 7 months ago
- ☆71Updated 7 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 7 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆19Updated 2 weeks ago
- Extension of ThermoMPNN for double mutant predictions☆46Updated last month
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆81Updated last week
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆35Updated 4 months ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Updated last year
- ☆15Updated last month
- Some scripts that I keep using over and over.☆20Updated 4 months ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆43Updated 2 years ago
- ☆45Updated 2 weeks ago
- ☆51Updated 11 months ago
- A pipeline that used ML model based on Rosetta descriptors to predict the binding affinity of protein-protein complexes☆44Updated 3 weeks ago
- Explicit crosslinks in AlphaFold 3☆23Updated 8 months ago