Alternatives and similar repositories for LotOfCells:

Users that are interested in LotOfCells are comparing it to the libraries listed below

• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆31Updated last year
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆36Updated last week
• phipsonlab / speckle
  R package for analysing single cell data
  ☆52Updated 2 years ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated 9 months ago
• wenweixiong / MARVEL
  ☆45Updated 7 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆71Updated 10 months ago
• immunogenomics / starCAT
  Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs
  ☆20Updated last month
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated last year
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆35Updated last week
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆34Updated 2 weeks ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆50Updated 2 years ago
• UPSUTER / GEMLI
  ☆30Updated last month
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• Teichlab / sctk
  ☆35Updated 5 months ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆50Updated last year
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆33Updated 2 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆20Updated last week
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated 10 months ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 2 months ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆26Updated 2 years ago
• swaruplabUCI / ArchRtoSignac
  An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
  ☆35Updated 6 months ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆31Updated 2 weeks ago
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆38Updated last year
• lcmmichielsen / scHPL
  ☆35Updated last week
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆21Updated 3 months ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆37Updated last year
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆20Updated 6 months ago
• cellatlas / cellatlas
  ☆16Updated 8 months ago
• gxiaolab / scAllele
  ☆32Updated 10 months ago
• chanwkimlab / MarcoPolo
  MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…
  ☆20Updated 3 months ago