AllenInstitute / patchseqtools
QC and cell type assignment for patch-seq transcriptomics data
☆15Updated 4 months ago
Related projects: ⓘ
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆15Updated 11 months ago
- Tools for working with single-neuron morphological reconstructions☆19Updated 4 months ago
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆10Updated 8 months ago
- computes intrinsic cell features from intracellular electrophysiology data☆24Updated 9 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆58Updated 9 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆50Updated 4 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆41Updated last year
- Histology processing☆61Updated 5 months ago
- COmmon COordinate FRAMEwork in R☆35Updated 4 years ago
- ☆18Updated 2 years ago
- ☆29Updated 11 months ago
- Open-source stereotaxic coordinator☆14Updated last year
- Calcium Data Extraction and Analysis☆43Updated last year
- Analysis tools specific to the aiephys multipatch project.☆11Updated 4 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆24Updated 2 years ago
- motion correction☆16Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆34Updated 2 weeks ago
- ☆51Updated 2 weeks ago
- IaC codebase for the NeuroCAAS Platform☆34Updated 9 months ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆63Updated 3 weeks ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆12Updated last year
- A lightweight python module to interact with atlases for systems neuroscience☆124Updated last week
- ☆18Updated 7 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆34Updated last year
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆25Updated 3 months ago
- "Approaches to Study Neural Circuits" course☆63Updated 3 years ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆52Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆26Updated 4 years ago
- https://nutil.readthedocs.io/en/latest/☆12Updated 3 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆49Updated 4 years ago