Alternatives and similar repositories for patchseqtools

Users that are interested in patchseqtools are comparing it to the libraries listed below

• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year
• AllenInstitute / cocoframer
  COmmon COordinate FRAMEwork in R
  ☆37Updated 5 years ago
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆17Updated 8 months ago
• yu-lab-vt / AQuA2
  Activity Quantification and Analysis for molecular spatiotemporal signals
  ☆30Updated last week
• AllenInstitute / ipfx
  computes intrinsic cell features from intracellular electrophysiology data
  ☆28Updated last month
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆54Updated last year
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆48Updated 3 years ago
• nel-lab / FIOLA
  ☆34Updated 6 months ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆55Updated 2 years ago
• AllenInstitute / drcme
  Dimensionality-reduction and classification for morphology and electrophysiology
  ☆13Updated last year
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆108Updated 3 months ago
• petersaj / AP_histology
  Histology processing
  ☆71Updated 2 months ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆28Updated 3 years ago
• deisseroth-lab / multifiber
  A GUI and library for doing multi-fiber photometry
  ☆18Updated 8 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• dervinism / minis
  'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/cur…
  ☆11Updated 11 months ago
• AllenInstitute / MIES
  Multichannel Igor Electrophysiology Suite
  ☆30Updated last week
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆167Updated last week
• LernerLab / GuPPy
  Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
  ☆81Updated this week
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• golshanilab / UCLA_2P_Miniscope
  UCLA Multiphoton Miniature Microscope
  ☆15Updated 6 months ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆92Updated 4 years ago
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 2 weeks ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆53Updated last week
• benengx / encodingmodel
  Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…
  ☆18Updated 6 years ago
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆55Updated this week
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆24Updated 3 years ago