AllenInstitute / patchseqtools
QC and cell type assignment for patch-seq transcriptomics data
☆19Updated 10 months ago
Alternatives and similar repositories for patchseqtools:
Users that are interested in patchseqtools are comparing it to the libraries listed below
- computes intrinsic cell features from intracellular electrophysiology data☆27Updated 4 months ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated this week
- Tools for working with single-neuron morphological reconstructions☆21Updated 10 months ago
- Histology processing☆65Updated last week
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 10 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆48Updated last year
- COmmon COordinate FRAMEwork in R☆36Updated 4 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆11Updated last year
- motion correction☆17Updated 2 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆38Updated 2 weeks ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 2 weeks ago
- ☆11Updated 8 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 5 months ago
- ☆51Updated 6 months ago
- Region Of Interest Classification and Tracking☆16Updated this week
- ☆18Updated 3 years ago
- IaC codebase for the NeuroCAAS Platform☆37Updated last year
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- ☆34Updated last year
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆72Updated 3 weeks ago
- Match suite2p ROIs between imaging sessions☆25Updated 5 years ago
- ☆19Updated last year
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆21Updated 2 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 3 weeks ago
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- Neuroscience/electrophsyiology data analysis tools (mostly Matlab)☆14Updated 5 years ago
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago