AllenInstitute / patchseqtools
QC and cell type assignment for patch-seq transcriptomics data
☆19Updated last year
Alternatives and similar repositories for patchseqtools:
Users that are interested in patchseqtools are comparing it to the libraries listed below
- computes intrinsic cell features from intracellular electrophysiology data☆27Updated 6 months ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated last month
- COmmon COordinate FRAMEwork in R☆36Updated 4 years ago
- Histology processing☆65Updated 2 weeks ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 11 months ago
- Tools for working with single-neuron morphological reconstructions☆21Updated last year
- ☆34Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- ☆8Updated 3 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- ☆18Updated 3 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 2 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 7 months ago
- ☆45Updated 4 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- 'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/cur…☆9Updated 4 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆21Updated 2 years ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆73Updated 2 months ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- ☆19Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Neuroscience/electrophsyiology data analysis tools (mostly Matlab)☆14Updated 5 years ago
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆40Updated 3 weeks ago
- ☆11Updated 8 years ago
- ☆23Updated 5 years ago
- motion correction☆17Updated 2 years ago
- ☆51Updated 8 months ago
- Analysis tools specific to the aiephys multipatch project.☆12Updated 5 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆29Updated 5 years ago