Alternatives and similar repositories for neuprint-python:

Users that are interested in neuprint-python are comparing it to the libraries listed below

• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆34Updated 9 months ago
• yashsmehta / MetaLearnPlasticity
  A deep learning based method to uncover brain learning rules from behavior or neural experimental data.
  ☆15Updated 3 months ago
• htem / FANC_auto_recon
  Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset
  ☆12Updated last month
• CAVEconnectome / nglui
  ☆10Updated last month
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆12Updated this week
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆21Updated 10 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆133Updated this week
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆48Updated last year
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆26Updated this week
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆66Updated 2 weeks ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆211Updated 5 months ago
• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆13Updated this week
• JoramKeijser / MIND
  Implemenation of Manifold Inference from Neural Dynamics (MIND) from Low & Lewallen et. al, '18
  ☆26Updated 6 years ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆91Updated 2 months ago
• int-brain-lab / ONE
  Open Neurophysiology Environment
  ☆18Updated 2 weeks ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆53Updated this week
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated last year
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 6 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆28Updated 4 years ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆45Updated 5 years ago
• TuragaLab / flyvis
  A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.
  ☆53Updated last month
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆62Updated this week
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆52Updated 3 weeks ago
• cwindolf / dartsort
  ☆21Updated this week
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆92Updated 8 months ago
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆141Updated this week
• Whitlock-Group / HERBS
  ☆51Updated 6 months ago
• jcouto / wfield
  Tools to process widefield data
  ☆15Updated 3 months ago