connectome-neuprint / neuprint-python
Python client utilties for interacting with the neuPrint connectome analysis service
☆31Updated last month
Alternatives and similar repositories for neuprint-python:
Users that are interested in neuprint-python are comparing it to the libraries listed below
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆34Updated 7 months ago
- A deep learning based method to uncover brain learning rules from behavior or neural experimental data.☆15Updated last month
- pipeline for volumetric cell segmentation☆11Updated last month
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆127Updated 2 weeks ago
- A Python interface to access neuroanatomical atlases☆128Updated this week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆45Updated last year
- a visualization method for neural data☆202Updated 3 months ago
- Tools for working with single-neuron morphological reconstructions☆21Updated 8 months ago
- Deconvolution of calcium imaging data☆86Updated this week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆62Updated 2 months ago
- ☆10Updated last month
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆12Updated 2 months ago
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆13Updated 5 months ago
- A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.☆47Updated last month
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆25Updated 3 weeks ago
- Automated 3D brain registration with support for multiple species and atlases.☆128Updated this week
- ☆51Updated 4 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆52Updated 8 months ago
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Updated 4 years ago
- ☆37Updated 5 months ago
- Histology processing☆64Updated 9 months ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 6 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆115Updated last week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆45Updated this week
- Pytorch implementation of LocaNMF☆34Updated 4 years ago
- ☆32Updated last year
- Open Neurophysiology Environment☆18Updated this week
- IaC codebase for the NeuroCAAS Platform☆35Updated last year