Alternatives and similar repositories for MD-AD

Users that are interested in MD-AD are comparing it to the libraries listed below

• CaiGroup / seqFISH-PLUS
  ☆52Updated 4 years ago
• weallen / STARmap
  Software for processing and analyzing STARmap experiments.
  ☆38Updated 6 years ago
• spacetx-spacejam / data
  data for spacejam2
  ☆18Updated 3 years ago
• LieberInstitute / HumanPilot
  Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
  ☆84Updated last year
• snap-stanford / stellar
  ☆69Updated 2 years ago
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆94Updated 7 months ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆33Updated last year
• jianhuupenn / ItClust
  Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
  ☆55Updated 3 months ago
• uhlerlab / cross-modal-autoencoders
  ☆55Updated 2 years ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆88Updated last year
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆55Updated 3 months ago
• cantinilab / momix-notebook
  ☆67Updated last year
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆59Updated 2 years ago
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆71Updated 4 years ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆68Updated last year
• berenslab / mini-atlas
  Phenotypic variation of transcriptomic cell types in mouse motor cortex
  ☆26Updated 3 years ago
• xiaoyeye / GCNG
  using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
  ☆56Updated 4 years ago
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆74Updated 2 years ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆76Updated last year
• suinleelab / contrastiveVI
  ☆56Updated last year
• klarman-cell-observatory / scPhere
  ☆102Updated 2 years ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆25Updated this week
• PeterZZQ / CeSpGRN
  CeSpGRN: Inferring cell specific GRN using single-cell gene expression data
  ☆20Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆46Updated last year
• zcang / SpaOTsc
  ☆45Updated 2 months ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆109Updated 11 months ago
• mlbio-epfl / systema
  ☆37Updated 2 months ago
• AllenInstitute / abc_atlas_access
  Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
  ☆85Updated this week
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 2 years ago
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆123Updated 2 years ago