BlueBrain / NeuroM

Related projects ⓘ

Alternatives and complementary repositories for NeuroM

• MouseLand / rastermap
  a visualization method for neural data
  ☆195Updated last month
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆83Updated this week
• BlueBrain / eFEL
  Electrophys Feature Extraction Library
  ☆68Updated this week
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆84Updated 2 months ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆123Updated last week
• brainglobe / brainglobe-atlasapi
  A lightweight python module to interact with atlases for systems neuroscience
  ☆127Updated this week
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆109Updated 3 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆123Updated 3 weeks ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated 11 months ago
• NeuralEnsemble / elephant
  Elephant is the Electrophysiology Analysis Toolkit
  ☆201Updated 2 weeks ago
• NeurodataWithoutBorders / pynwb
  A Python API for working with Neurodata stored in the NWB Format
  ☆177Updated this week
• int-brain-lab / iblrig
  Main repository for IBL rig code
  ☆22Updated this week
• NeurodataWithoutBorders / nwb-schema
  Data format specification schema for the NWB neurophysiology data format
  ☆53Updated this week
• Whitlock-Group / HERBS
  ☆51Updated 2 months ago
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆61Updated this week
• AllenInstitute / neuroglia
  a Python machine learning library for neurophysiology data
  ☆36Updated 6 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆124Updated 8 months ago
• kwikteam / klusta
  Automatic spike sorting up to 64 channels
  ☆53Updated 3 years ago
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated last year
• PeyracheLab / miniscoPy
  A package to analyse calcium imaging data recorded with the Miniscope.
  ☆32Updated 2 years ago
• cortex-lab / KiloSort
  GPU code for spike sorting
  ☆179Updated 9 months ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆51Updated this week
• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆52Updated last year
• petersaj / AP_histology
  Histology processing
  ☆64Updated 8 months ago
• SpikeInterface / spiketoolkit
  Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.
  ☆49Updated 2 years ago
• BlueBrain / SimulationTutorials
  Public tutorials around electrophysiological simulations
  ☆26Updated 2 years ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆113Updated last month
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆45Updated last year
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆96Updated 3 weeks ago
• spyking-circus / spyking-circus
  Fast and scalable spike sorting in python
  ☆84Updated last year