AllenInstitute / visual_behavior_analysis
Python package for analyzing behavioral data for Brain Observatory: Visual Behavior
☆25Updated 3 months ago
Alternatives and similar repositories for visual_behavior_analysis:
Users that are interested in visual_behavior_analysis are comparing it to the libraries listed below
- State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data☆48Updated 7 months ago
- IBL core shared libraries☆63Updated this week
- A repository of neural manifold techniques described and compared in "Neural manifold analysis of brain circuit dynamics in health and di…☆25Updated last year
- ☆50Updated 2 years ago
- A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA☆34Updated last year
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆55Updated last year
- Library to perform Slice Tensor Component Analysis (sliceTCA)☆50Updated last month
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆39Updated last month
- Fitting low-rank RNNs to neural trajectories (LINT method).☆16Updated last month
- Toolbox for analyzing behavioral videos and neural activity☆59Updated last year
- Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and thet…☆23Updated 2 years ago
- WIP: Python port of Kilosort2☆50Updated last year
- Supplementary code for the paper "Linking connectivity, dynamics and computations in low-rank recurrent neural networks" by F. Mastrogius…☆34Updated 6 years ago
- Code accompanying Steinmetz et al., 2019☆59Updated 3 years ago
- Some python functions to supplement the NEURON python module☆29Updated 5 years ago
- Repository to host materials for the summer workshop on the dynamic brain☆30Updated 2 years ago
- SpikeForest -- spike sorting analysis for website -- version 2☆34Updated 2 years ago
- Matlab exercises with solutions to implement and visualise concepts from Sara Solla's talk on World Wide Neuro (Apr 29, 2020)☆20Updated 4 years ago
- A TensorFlow 2.0 implementation of Latent Factor Analysis via Dynamical Systems (LFADS) and AutoLFADS.☆21Updated last year
- Matlab interface for Latent Factor Analysis via Dynamical Systems (LFADS)☆49Updated 3 years ago
- Preferential Subspace Identification Algorithm☆52Updated 6 months ago
- Decoding and geometrical analysis of neural activity with built-in best practices☆36Updated 2 weeks ago
- Open-source, graph-based Python code generator and analysis toolbox for dynamical systems (pre-implemented and custom models). Most pre-i…☆79Updated 8 months ago
- GLMCC: The generalized linear model for spike cross-correlation (Kobayashi et al., Nature Communications, 2019)☆35Updated 2 years ago
- Implemenation of Manifold Inference from Neural Dynamics (MIND) from Low & Lewallen et. al, '18☆28Updated 6 years ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆45Updated 5 years ago
- NEural MOdelS, a statistical modeling framework for neuroscience.☆95Updated last week
- Gallery of visualizations and analyses of the Allen Brain Observatory☆24Updated 2 years ago
- Analysis for grid cells, grid fields, and head direction.☆18Updated 4 years ago
- Pytorch implementation of LFADS for demo at CAN workshop☆19Updated 5 years ago