A Nextflow Pipeline for Analysis of NGS-based HIV Drug Resistance Data
☆12Mar 2, 2025Updated last year
Alternatives and similar repositories for QuasiFlow
Users that are interested in QuasiFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sequences from HIV Easily Reconstructed☆29May 3, 2024Updated 2 years ago
- Structured knowledge base of HIV-1/HIV-2.☆11Sep 27, 2026Updated 3 weeks ago
- FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2☆15Aug 12, 2025Updated last year
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆14Aug 13, 2026Updated 2 months ago
- HIVdb webservice client☆13Jan 22, 2026Updated 9 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Visualize microbial evolution at the SNP level!☆18Aug 12, 2025Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 6 months ago
- Fast viral consensus genome reconstruction☆27Sep 16, 2026Updated last month
- An automated assembly pipeline for microbial genomes☆19Aug 26, 2026Updated last month
- ☆22Jun 1, 2026Updated 4 months ago
- Repo for PrimerSchemes☆22Sep 14, 2026Updated last month
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆25Feb 22, 2026Updated 8 months ago
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- Reconstruction and analysis of viral and host genomes at multi-organ level☆21Apr 10, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆11Mar 2, 2023Updated 3 years ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- Tree interpretation methods based on ranger☆13Oct 12, 2026Updated last week
- ☆30Mar 6, 2025Updated last year
- HIVDB Genotypic Resistance Interpretation Program☆23Sep 27, 2026Updated 3 weeks ago
- ☆48Oct 2, 2023Updated 3 years ago
- ☆32Sep 21, 2023Updated 3 years ago
- A proviral intactness pipeline.☆10May 31, 2023Updated 3 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆18Jul 27, 2023Updated 3 years ago
- A script to re-color a FigTree saved Nexus file☆13Jan 29, 2017Updated 9 years ago
- Cluster Investigation & Virus Epidemiology Tool☆51Jul 6, 2026Updated 3 months ago
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆23Oct 21, 2025Updated last year
- Full-length de novo viral haplotype reconstruction from noisy long reads☆22Nov 6, 2023Updated 2 years ago
- Bayesian tool for APOBEC hypermutation analysis☆11Apr 5, 2018Updated 8 years ago
- Metagenomic Analysis in Real Time☆31Updated this week
- A Slack bot for LLM/ImageGen responses using an OpenAI API backend (LlamaCPP, Ollama, etc)☆14Oct 7, 2026Updated 2 weeks ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆26Feb 26, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆38Jan 12, 2026Updated 9 months ago
- Mycobacterial pipeline☆11Sep 11, 2025Updated last year
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 4 years ago
- ☆12Updated this week