ramics / HIVIntactLinks
A proviral intactness pipeline.
☆9Updated 2 years ago
Alternatives and similar repositories for HIVIntact
Users that are interested in HIVIntact are comparing it to the libraries listed below
Sorting:
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- A tool for Racon polishing of miniasm assemblies☆76Updated 3 weeks ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 5 years ago
- ☆116Updated last week
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆80Updated 4 years ago
- Benchmark datasets for WGS analysis☆39Updated 5 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- SV caller for nanopore data☆91Updated 5 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- ☆31Updated last year
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- Long read aligner☆115Updated 2 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- A fork of exonerate: a generic tool for sequence alignment☆67Updated last year
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆80Updated 7 months ago
- A program to call variants from genome alignment☆80Updated 2 months ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆10Updated last week
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆107Updated last year
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated last month
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆44Updated 10 months ago
- SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension☆47Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago